Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FEO88_RS18525 Genome accession   NZ_CP040439
Coordinates   3982334..3983392 (-) Length   352 a.a.
NCBI ID   WP_010484061.1    Uniprot ID   A0A0L8AA94
Organism   Stenotrophomonas maltophilia strain PEG-141     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3977334..3988392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO88_RS18505 (FEO88_18665) - 3978263..3980230 (-) 1968 WP_154353289.1 type IV pilus secretin PilQ family protein -
  FEO88_RS18510 (FEO88_18670) - 3980252..3980758 (-) 507 WP_010484064.1 pilus assembly protein PilP -
  FEO88_RS18515 (FEO88_18675) pilO 3980785..3981441 (-) 657 WP_049400744.1 type 4a pilus biogenesis protein PilO -
  FEO88_RS18520 (FEO88_18680) - 3981438..3982334 (-) 897 WP_154353290.1 PilN domain-containing protein -
  FEO88_RS18525 (FEO88_18685) pilM 3982334..3983392 (-) 1059 WP_010484061.1 pilus assembly protein PilM Machinery gene
  FEO88_RS18530 (FEO88_18690) - 3983612..3986035 (+) 2424 WP_154353291.1 penicillin-binding protein 1A -
  FEO88_RS18535 (FEO88_18695) - 3986332..3986976 (+) 645 WP_012511978.1 hypothetical protein -
  FEO88_RS18540 (FEO88_18700) - 3987259..3988002 (-) 744 WP_154353292.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37753.41 Da        Isoelectric Point: 4.4089

>NTDB_id=364443 FEO88_RS18525 WP_010484061.1 3982334..3983392(-) (pilM) [Stenotrophomonas maltophilia strain PEG-141]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=364443 FEO88_RS18525 WP_010484061.1 3982334..3983392(-) (pilM) [Stenotrophomonas maltophilia strain PEG-141]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGTGGCAATCGTTTTCGTGTGGAACATTACGCTGTGGAACCTCTACCGCCGAATGCAGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGCGCGATGAACCGCTCGGGAAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCTGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAGCTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTATGCCCTGGTCGCCAGCGAGCTGCCGGT
ATCCATCGAGGGTGTGGTCGCGCTGGTCGACATCGGTGCCACCATGACCACCCTCAATGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCAGGCAGCGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGCGGGCTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTGAACGCGCATGCGCTGGCCCAGGACGCCCCCGCGCTGATGATCGCAACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8AA94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment