Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FEO94_RS17430 Genome accession   NZ_CP040433
Coordinates   3781345..3782403 (-) Length   352 a.a.
NCBI ID   WP_014038321.1    Uniprot ID   A0AAP7J1E4
Organism   Stenotrophomonas maltophilia strain SKK55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3776345..3787403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO94_RS17410 (FEO94_17570) - 3777289..3779259 (-) 1971 WP_061479337.1 type IV pilus secretin PilQ family protein -
  FEO94_RS17415 (FEO94_17575) - 3779281..3779814 (-) 534 WP_005418914.1 pilus assembly protein PilP -
  FEO94_RS17420 (FEO94_17580) pilO 3779814..3780470 (-) 657 WP_049411380.1 type 4a pilus biogenesis protein PilO -
  FEO94_RS17425 (FEO94_17585) - 3780467..3781345 (-) 879 WP_154351346.1 PilN domain-containing protein -
  FEO94_RS17430 (FEO94_17590) pilM 3781345..3782403 (-) 1059 WP_014038321.1 pilus assembly protein PilM Machinery gene
  FEO94_RS17435 (FEO94_17595) - 3782623..3785046 (+) 2424 WP_049439722.1 penicillin-binding protein 1A -
  FEO94_RS17440 (FEO94_17600) - 3785237..3785881 (+) 645 WP_154351347.1 hypothetical protein -
  FEO94_RS17445 (FEO94_17605) - 3785997..3786743 (-) 747 WP_154351348.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37741.35 Da        Isoelectric Point: 4.4006

>NTDB_id=364406 FEO94_RS17430 WP_014038321.1 3781345..3782403(-) (pilM) [Stenotrophomonas maltophilia strain SKK55]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPADLDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGSIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=364406 FEO94_RS17430 WP_014038321.1 3781345..3782403(-) (pilM) [Stenotrophomonas maltophilia strain SKK55]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGCGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTGGAGAAGAACATCG
TTGAAGTGGAGGCCGTCGGTGAGGCCATCCGCCGGGCGATGAACCGTTCAGGCAGCAAGGCCAAGTTGGCCGCTGCCGCC
GTCGCGGGGTCGGCGGTGATCACCAAAGTGATCCCGATGCCGGCCGATCTCGACGAAAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGTCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAATGTCGAGCTGCGCCAGTCCGCACTGGAGCTCGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAGAACGCCTACGCCTTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGACGGTGTGGTTGCGCTGGTCGACATCGGCGCCACCATGACCACCCTCAATGTCCTGCGCGGCGGCCGTAGCC
TTTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTATGGCCTGAGCTACGAGGAA
GCCGGGCTGGCCAAGCGCCAGGGTGGCCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAACCGCGTCGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTCGGTGGCCTGCCGGAGATGGTCGAGGAGCAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTGAACGCGCATGCGTTGGCCCAGGATGCCCCCGCGCTGATGATCGCGACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment