Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FEO85_RS17325 Genome accession   NZ_CP040431
Coordinates   3730675..3731733 (-) Length   352 a.a.
NCBI ID   WP_154329588.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain sm454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3725675..3736733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO85_RS17305 (FEO85_17470) - 3726613..3728580 (-) 1968 WP_005410855.1 type IV pilus secretin PilQ -
  FEO85_RS17310 (FEO85_17475) - 3728602..3729105 (-) 504 WP_044571441.1 pilus assembly protein PilP -
  FEO85_RS17315 (FEO85_17480) pilO 3729132..3729788 (-) 657 WP_099484113.1 type 4a pilus biogenesis protein PilO -
  FEO85_RS17320 (FEO85_17485) - 3729785..3730675 (-) 891 WP_012481141.1 PilN domain-containing protein -
  FEO85_RS17325 (FEO85_17490) pilM 3730675..3731733 (-) 1059 WP_154329588.1 pilus assembly protein PilM Machinery gene
  FEO85_RS17330 (FEO85_17495) - 3731953..3734376 (+) 2424 WP_060380570.1 penicillin-binding protein 1A -
  FEO85_RS17335 (FEO85_17500) - 3734587..3735231 (+) 645 WP_060380571.1 hypothetical protein -
  FEO85_RS17340 (FEO85_17505) - 3735408..3736151 (-) 744 WP_060380572.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37797.42 Da        Isoelectric Point: 4.3716

>NTDB_id=364365 FEO85_RS17325 WP_154329588.1 3730675..3731733(-) (pilM) [Stenotrophomonas maltophilia strain sm454]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSDSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=364365 FEO85_RS17325 WP_154329588.1 3730675..3731733(-) (pilM) [Stenotrophomonas maltophilia strain sm454]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTAGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGTTCAGACAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCACTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGACGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGTCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGCGGGCTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment