Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LSE_RS00165 Genome accession   NC_013891
Coordinates   34590..35132 (+) Length   180 a.a.
NCBI ID   WP_003744970.1    Uniprot ID   -
Organism   Listeria seeligeri serovar 1/2b str. SLCC3954     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 29590..40132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSE_RS00135 - 29641..30271 (-) 631 Protein_26 WxPxxD family membrane protein -
  LSE_RS00140 (lse_0029) - 30258..31022 (-) 765 WP_012984591.1 hypothetical protein -
  LSE_RS00145 (lse_0030) - 31414..31752 (+) 339 WP_003721652.1 DUF4064 domain-containing protein -
  LSE_RS00150 (lse_0031) - 31991..32650 (+) 660 WP_003750454.1 DedA family protein -
  LSE_RS00155 (lse_0032) arcA 32729..33958 (+) 1230 WP_012984592.1 arginine deiminase -
  LSE_RS00160 (lse_0033) rpsF 34240..34533 (+) 294 WP_003718123.1 30S ribosomal protein S6 -
  LSE_RS00165 (lse_0034) ssbA 34590..35132 (+) 543 WP_003744970.1 single-stranded DNA-binding protein Machinery gene
  LSE_RS00170 (lse_0035) rpsR 35175..35414 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  LSE_RS00175 (lse_0036) - 35568..36179 (+) 612 WP_012984593.1 PepSY domain-containing protein -
  LSE_RS00180 (lse_0037) - 36434..37048 (+) 615 WP_003750466.1 accessory gene regulator ArgB-like protein -
  LSE_RS00185 (lse_0038) - 37032..37193 (+) 162 WP_003745028.1 cyclic lactone autoinducer peptide -
  LSE_RS00190 (lse_0039) - 37285..38580 (+) 1296 WP_012984594.1 sensor histidine kinase -
  LSE_RS00195 (lse_0040) - 38599..39327 (+) 729 WP_003745030.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19683.34 Da        Isoelectric Point: 4.9264

>NTDB_id=36429 LSE_RS00165 WP_003744970.1 34590..35132(+) (ssbA) [Listeria seeligeri serovar 1/2b str. SLCC3954]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNSGGGNNYQGGNTTNNSNYNNGGNNFGQAPTNNGGFAQDQQQSQNQNHQSTN
NDPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=36429 LSE_RS00165 WP_003744970.1 34590..35132(+) (ssbA) [Listeria seeligeri serovar 1/2b str. SLCC3954]
ATGATGAATCGTGTTGTACTCGTAGGACGCTTAACTAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACACTTGCTGTAAATCGTACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGACGGCCGCGTTCAAACTCGT
AATTACGAGGGAAATGACGGTAAACGTGTTTATGTGACAGAAATTGTGGCTGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATAGTGGCGGCGGAAATAACTATCAAGGTGGCAATACTACTAACAACAGTAATTATAATAATGGTGGAAATAATT
TCGGACAAGCACCTACTAATAACGGTGGATTCGCACAGGACCAGCAACAATCTCAAAATCAAAATCATCAATCCACTAAC
AATGATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65

100

0.65
  ssb Latilactobacillus sakei subsp. sakei 23K

54.054

100

0.556
  ssb Glaesserella parasuis strain SC1401

35.484

100

0.367
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

58.889

0.361

Multiple sequence alignment