Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FED53_RS00895 Genome accession   NZ_CP040367
Coordinates   50161..50661 (+) Length   166 a.a.
NCBI ID   WP_025907886.1    Uniprot ID   -
Organism   Priestia flexa isolate 1-2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 45161..55661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED53_RS00865 (FED53_00865) yyaC 45544..46164 (-) 621 WP_025907880.1 spore protease YyaC -
  FED53_RS00870 (FED53_00870) - 46249..47265 (+) 1017 WP_061785678.1 hypothetical protein -
  FED53_RS00875 (FED53_00875) - 47326..48237 (+) 912 WP_138116320.1 mechanosensitive ion channel family protein -
  FED53_RS00880 (FED53_00880) - 48234..48431 (+) 198 WP_025907883.1 DUF951 domain-containing protein -
  FED53_RS00885 (FED53_00885) ychF 48570..49670 (+) 1101 WP_025907884.1 redox-regulated ATPase YchF -
  FED53_RS00890 (FED53_00890) rpsF 49829..50116 (+) 288 WP_025907885.1 30S ribosomal protein S6 -
  FED53_RS00895 (FED53_00895) ssbA 50161..50661 (+) 501 WP_025907886.1 single-stranded DNA-binding protein Machinery gene
  FED53_RS00900 (FED53_00900) rpsR 50723..50962 (+) 240 WP_013059913.1 30S ribosomal protein S18 -
  FED53_RS00905 (FED53_00905) - 51098..52045 (+) 948 WP_138116322.1 YybS family protein -
  FED53_RS00910 (FED53_00910) - 52084..54057 (+) 1974 WP_061785681.1 DHH family phosphoesterase -
  FED53_RS00915 (FED53_00915) rplI 54054..54503 (+) 450 WP_025907889.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18182.93 Da        Isoelectric Point: 4.7821

>NTDB_id=363667 FED53_RS00895 WP_025907886.1 50161..50661(+) (ssbA) [Priestia flexa isolate 1-2-1]
MMNRVILVGRLTKDPELRYTPNGAAVATFTLAVNRAFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDMQRNNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDNDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=363667 FED53_RS00895 WP_025907886.1 50161..50661(+) (ssbA) [Priestia flexa isolate 1-2-1]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTGACGAAAGATCCTGAATTACGTTATACCCCCAATGGAGCTGCAGTTGC
AACATTCACGCTAGCAGTAAACCGCGCATTTACAAACCAACAGGGTGAACGTGAGGCGGACTTTATTAACTGTGTCGTAT
GGCGTCGTCCTGCTGAAAATGTAGCAAACTTTTTGAAAAAAGGTAGTTTAGCTGGTGTTGATGGACGTTTGCAATCTCGT
AGTTATGAAGGACAAGACGGTCGTCGAGTTTATGTAACAGAGGTTGTGGCAGAAAGTGTGCAATTCTTAGAACCAAAAAG
TGGTGGCGGGGATATGCAACGCAATAACTTTGCTAACACTGGTGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATAATGATCCATTTGCAAATAATGGTGAAACAATCGACATCTCT
GATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72

100

0.759
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.361

Multiple sequence alignment