Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FE254_RS05255 Genome accession   NZ_CP040349
Coordinates   1188431..1189771 (-) Length   446 a.a.
NCBI ID   WP_286586462.1    Uniprot ID   -
Organism   Pseudomonas guguanensis strain HMFL31     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183431..1194771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE254_RS05225 (FE254_05280) - 1184157..1184711 (-) 555 WP_011912159.1 PilX N-terminal domain-containing pilus assembly protein -
  FE254_RS05230 (FE254_05285) - 1184708..1185403 (-) 696 WP_158234266.1 PilW family protein -
  FE254_RS05235 (FE254_05290) pilV 1185456..1186037 (-) 582 WP_286586458.1 type IV pilus modification protein PilV -
  FE254_RS05240 (FE254_05295) - 1186046..1186582 (-) 537 WP_279534467.1 GspH/FimT family pseudopilin -
  FE254_RS05245 (FE254_05300) - 1186676..1187170 (-) 495 WP_279534468.1 GspH/FimT family pseudopilin -
  FE254_RS05250 (FE254_05305) thiO 1187229..1188341 (+) 1113 WP_286587181.1 glycine oxidase ThiO -
  FE254_RS05255 (FE254_05310) pilR 1188431..1189771 (-) 1341 WP_286586462.1 sigma-54 dependent transcriptional regulator Regulator
  FE254_RS05260 (FE254_05315) pilS 1189774..1191366 (-) 1593 WP_090427103.1 ATP-binding protein Regulator
  FE254_RS05265 (FE254_05320) - 1191356..1191592 (-) 237 WP_286586463.1 PP0621 family protein -
  FE254_RS05270 (FE254_05325) - 1191780..1192772 (-) 993 WP_090427097.1 outer membrane protein assembly factor BamD -
  FE254_RS05275 (FE254_05330) rluD 1192911..1193885 (+) 975 WP_286586465.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FE254_RS05280 (FE254_05335) pgeF 1193882..1194613 (+) 732 WP_286586466.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49860.12 Da        Isoelectric Point: 5.4538

>NTDB_id=363548 FE254_RS05255 WP_286586462.1 1188431..1189771(-) (pilR) [Pseudomonas guguanensis strain HMFL31]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQYIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRSPEGEETPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRVEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLADVM
LARLADGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPSDLRLADASGPGNEGGETSLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=363548 FE254_RS05255 WP_286586462.1 1188431..1189771(-) (pilR) [Pseudomonas guguanensis strain HMFL31]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCGCGCGAGTGGCTGGCGCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGTACATCCAGCAGCGCCATCCACAGGTTCCAGTGGCGATG
ATCACCGCCTACGGCAGCCTGGATACCGCGATCAACTCGCTCAAGGCCGGGGCCTTCGACTTCCTCACCAAACCGGTGGA
CCTCGGCCGGCTGCGCGAGCTGGTCGCCACCGCCCTGCGCATTCGCTCGCCCGAAGGCGAGGAAACCCCGGTCGACAGTC
GTCTGCTCGGTGACTCCCCGCCGATGAAGTCGCTGCGCAAGCAGATCCAGAAACTCTCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATCCACGAACAGGGCCCGCGCGTCGAACAGCCGTT
CGTACCGGTCAACTGCGGCGCGATTCCCTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCATAAGAAAGGCAGTTTTACTG
GCGCCATTGAAGACAAGCAGGGCCTGTTCCAGGCGGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGATCTGCCG
CTGCCGATGCAGGTCAAACTACTGCGCGCGATTCAGGAGAAGGCCGTGCGCGCCGTCGGTGGCCAACAGGAAGTGGTGGT
CGATGTACGCATCCTCTGCGCCACCCACAAGGATCTGGCAGCCGAAGTCGCGGCTGGCCGTTTCCGCCAGGACCTCTACT
ACCGGCTCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGTGAGCGGCGCGAAGATATCGCCCAATTGGCTGACGTGATG
CTCGCGCGCCTGGCCGATGGCACTGGCCTGGCCGCCGCCAAATTGCACCCCGACGCACTGGAAAAACTGAAGAATTACCG
CTTCCCCGGTAACGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTCTGCGAAGACGATCAGATCACGCCCA
GCGACCTGCGCCTGGCCGATGCCAGCGGCCCTGGCAACGAAGGCGGCGAAACCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTTGAGGACATCGAACGCAAGCTGATCATGCAGGCATTGGAAGAAACGCGCTGGAACCGCACAGCGGCGGCTCA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.013

100

0.89
  pilR Acinetobacter baumannii strain A118

49.13

100

0.507
  luxO Vibrio cholerae strain A1552

38.117

100

0.381

Multiple sequence alignment