Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EUC39_RS05000 Genome accession   NZ_CP040334
Coordinates   997906..998427 (+) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus cereus strain DLOU-Changhai     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 992906..1003427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS04970 spo0J 993354..994205 (+) 852 WP_080473669.1 stage 0 sporulation protein Spo0J -
  EUC39_RS04975 yyaC 994226..994822 (-) 597 WP_061660971.1 spore protease YyaC -
  EUC39_RS04980 - 995082..995963 (+) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  EUC39_RS04985 - 996023..996181 (+) 159 WP_153577919.1 DUF951 domain-containing protein -
  EUC39_RS04990 ychF 996297..997397 (+) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  EUC39_RS04995 rpsF 997589..997879 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  EUC39_RS05000 ssbA 997906..998427 (+) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  EUC39_RS05005 rpsR 998473..998706 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  EUC39_RS05010 - 998787..999722 (+) 936 WP_053563260.1 YybS family protein -
  EUC39_RS05015 - 999801..1001773 (+) 1973 Protein_895 DHH family phosphoesterase -
  EUC39_RS05020 rplI 1001770..1002216 (+) 447 WP_000864223.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=363287 EUC39_RS05000 WP_002094213.1 997906..998427(+) (ssbA) [Bacillus cereus strain DLOU-Changhai]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=363287 EUC39_RS05000 WP_002094213.1 997906..998427(+) (ssbA) [Bacillus cereus strain DLOU-Changhai]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387

Multiple sequence alignment