Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   TCK1_RS07440 Genome accession   NZ_CP040324
Coordinates   1597294..1599507 (+) Length   737 a.a.
NCBI ID   WP_027609507.1    Uniprot ID   A0A7U6RBG0
Organism   Pseudomonas monteilii strain TCU-CK1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592294..1604507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TCK1_RS07420 (TCK1_1476) - 1594170..1594793 (+) 624 WP_027609506.1 glutathione S-transferase -
  TCK1_RS07425 (TCK1_1477) - 1594927..1595859 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  TCK1_RS07430 (TCK1_1478) - 1595856..1596635 (+) 780 WP_019098550.1 ABC transporter permease -
  TCK1_RS07435 (TCK1_1479) - 1596645..1597151 (-) 507 Protein_1451 DUF2062 domain-containing protein -
  TCK1_RS07440 (TCK1_1480) comA 1597294..1599507 (+) 2214 WP_027609507.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TCK1_RS07445 (TCK1_1481) exbB 1599637..1600272 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  TCK1_RS07450 (TCK1_1482) - 1600269..1600703 (+) 435 WP_012271149.1 ExbD/TolR family protein -
  TCK1_RS07455 (TCK1_1483) lpxK 1600703..1601704 (+) 1002 WP_019098600.1 tetraacyldisaccharide 4'-kinase -
  TCK1_RS07460 - 1601749..1601935 (+) 187 Protein_1456 Trm112 family protein -
  TCK1_RS07465 (TCK1_1484) kdsB 1601932..1602696 (+) 765 WP_019098599.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  TCK1_RS07470 (TCK1_1485) - 1602696..1603160 (+) 465 WP_016715130.1 low molecular weight protein-tyrosine-phosphatase -
  TCK1_RS07475 (TCK1_1486) murB 1603157..1604176 (+) 1020 WP_025754830.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79169.27 Da        Isoelectric Point: 10.6918

>NTDB_id=363256 TCK1_RS07440 WP_027609507.1 1597294..1599507(+) (comA) [Pseudomonas monteilii strain TCU-CK1]
MRTGMFALALGLLCLGFLPVLPSVGWLIALAACAVASLFTRVWPLGCFLLGLCWACGSAQLALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELDAARSRRAELPQRLQLSWFGGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDALRQRLLAVEANGRTAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPVRLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGALLPLLLALVVVLLVEPL
AALLPGFWLSFSAVATLLYCFSARLGGWRPWRAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWISLAVLPLAL
LGTVLLPLPGVGEALLWLAGGLLDLLFRGLALVAQQRPAWMPPALPVWAWLLVCLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPAKGDSDLGERVVLPTLRKLGVAALDVMLVSHAHADHAGGAA
AIQRGLPVRRIIGGEALGDVPLQPCVSGERWDWDGVRFSLWRWADAQSSNDRSCVLMVEAQGERLLLAGDMEAGAERAWL
AATEAPGIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHVQVLERYRRYGVAIHDTAVEGALRLVVGRQG
EVEGVRGQRRFWRAQLD

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=363256 TCK1_RS07440 WP_027609507.1 1597294..1599507(+) (comA) [Pseudomonas monteilii strain TCU-CK1]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGTACTGCCATCGGTCGGATGGTT
GATCGCGCTGGCTGCCTGCGCTGTCGCCAGCCTGTTCACCCGCGTGTGGCCGTTGGGTTGTTTTCTGCTGGGTTTGTGTT
GGGCTTGCGGGTCTGCTCAGCTGGCCCTTGATGATCGCCTGGCTGCCGGCCTGGATGGCCGCACCTTGTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGCCCGAACGGCACAAGGCGTGCGCTTCGAGCTGGACGCTGCACGCTCGCGGCGGGCCGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGGTGGGCCGCCTCTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGCCGGGCTGTTGAACCCGCATGGGCCGGACCGCGAGGCGCAACTGCTGGCGCGGCGGGTGGGTGCCACGGGC
ACGGTCAAGGCAGGGCAGCTGCTGGCGCCAGTAACCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTCGCAGTCGA
GGCCAATGGCCGAACGGCGGCGTTGGTGGCGCTGGTGCTGGGCGATGGGGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACTGGCACGGTGCACCTGCTGGTGATTTCTGGCCAGCACATCGGCCTGGTGGCCGGTTTGCTGTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTGTGGCCTGTACGGCTGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCCATGGCCGC
TGCGCTGGCGTACGGTTGGCTGGCCGGTGCGGGCGTGCCAGTGCAGCGCGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGTCTGCGTTTTCGCCACCTCGGTGCACTGTTGCCGCTGTTGCTGGCGCTGGTCGTGGTGTTGCTGGTCGAACCGCTG
GCGGCATTGTTGCCGGGGTTCTGGCTGTCGTTTTCCGCAGTCGCCACGCTTCTCTATTGCTTCAGTGCCCGGCTAGGGGG
CTGGCGGCCCTGGCGAGCCTGGACGCGGGCGCAATGGGTAATCGCCATCGGTTTGCTGCCAGTGTTGTTGGCCACTGGCC
TGCCGGTGAGCTTGAGTGCGCCGTTGGCCAATCTGGTAGCGGTGCCGTGGATCAGCCTGGCGGTGTTGCCGTTGGCGCTG
CTGGGCACGGTACTGCTGCCATTGCCCGGGGTAGGGGAGGCGTTGTTATGGCTGGCGGGCGGGCTGCTGGACCTGTTGTT
CCGGGGGTTGGCGTTGGTGGCGCAACAGCGCCCGGCCTGGATGCCGCCAGCATTGCCAGTGTGGGCCTGGTTGCTGGTTT
GCCTGGGGGCGCTGTTGCTGCTGCTGCCTCGGGGCGTGCCGTTGCGTGGGTTGGGGGGCGTGATGCTGTTGGCCCTGTGG
GTGCCGAGGGAGCCGGTGCCGCTTGGGCAGGTCGAAGTCTGGCAACTGGACGTCGGCCAAGGGCTGGCAGTGCTGTTGCG
CACCCGCCATCACAACCTGCTTTACGATGCCGGGCCGGCCAAGGGTGACAGTGACCTGGGCGAACGGGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGCGTGGCGGCCCTTGACGTGATGCTGGTCAGCCACGCCCATGCTGATCATGCGGGCGGTGCTGCC
GCTATCCAGCGAGGTCTGCCGGTGCGGCGGATTATCGGTGGGGAAGCGCTGGGCGATGTTCCGTTGCAACCTTGTGTCAG
CGGCGAGCGATGGGACTGGGATGGCGTGCGGTTTTCGCTATGGCGTTGGGCCGACGCACAGAGCAGCAATGACCGCTCTT
GTGTGCTGATGGTCGAGGCACAGGGCGAGCGATTGCTGCTGGCGGGGGATATGGAGGCTGGGGCCGAACGGGCCTGGCTG
GCGGCCACAGAGGCGCCGGGAATCGACTGGTTGCAGTCGCCGCACCATGGCAGCCGCAGCTCGTCCAGCGAGGCTTTCAT
CCGTGCCACGGCGCCGCGCGGGGTGCTGATTTCGCGTGGGCGCAACAACAGCTTTGGGCACCCGCATGTGCAGGTGCTCG
AGCGCTATCGGCGGTATGGGGTGGCGATACATGATACGGCGGTGGAGGGAGCGTTGCGGTTGGTGGTGGGGCGGCAGGGG
GAGGTTGAAGGTGTTCGGGGGCAGCGGCGGTTTTGGCGGGCTCAACTGGACTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U6RBG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60

97.693

0.586
  comA Ralstonia pseudosolanacearum GMI1000

37.032

100

0.389

Multiple sequence alignment