Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   TCK1_RS07445 Genome accession   NZ_CP040324
Coordinates   1599637..1600272 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas monteilii strain TCU-CK1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594637..1605272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TCK1_RS07425 (TCK1_1477) - 1594927..1595859 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  TCK1_RS07430 (TCK1_1478) - 1595856..1596635 (+) 780 WP_019098550.1 ABC transporter permease -
  TCK1_RS07435 (TCK1_1479) - 1596645..1597151 (-) 507 Protein_1451 DUF2062 domain-containing protein -
  TCK1_RS07440 (TCK1_1480) comA 1597294..1599507 (+) 2214 WP_027609507.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TCK1_RS07445 (TCK1_1481) exbB 1599637..1600272 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  TCK1_RS07450 (TCK1_1482) - 1600269..1600703 (+) 435 WP_012271149.1 ExbD/TolR family protein -
  TCK1_RS07455 (TCK1_1483) lpxK 1600703..1601704 (+) 1002 WP_019098600.1 tetraacyldisaccharide 4'-kinase -
  TCK1_RS07460 - 1601749..1601935 (+) 187 Protein_1456 Trm112 family protein -
  TCK1_RS07465 (TCK1_1484) kdsB 1601932..1602696 (+) 765 WP_019098599.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  TCK1_RS07470 (TCK1_1485) - 1602696..1603160 (+) 465 WP_016715130.1 low molecular weight protein-tyrosine-phosphatase -
  TCK1_RS07475 (TCK1_1486) murB 1603157..1604176 (+) 1020 WP_025754830.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=363257 TCK1_RS07445 WP_016391244.1 1599637..1600272(+) (exbB) [Pseudomonas monteilii strain TCU-CK1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=363257 TCK1_RS07445 WP_016391244.1 1599637..1600272(+) (exbB) [Pseudomonas monteilii strain TCU-CK1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACTGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCA
GCAGGCCTGATGGTCGGTATCCCGGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment