Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SMI_RS05955 Genome accession   NC_013853
Coordinates   1170226..1171035 (-) Length   269 a.a.
NCBI ID   WP_000004959.1    Uniprot ID   A0A428HZR1
Organism   Streptococcus mitis B6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165226..1176035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS05940 (smi_1172) - 1165960..1167861 (-) 1902 WP_000584867.1 ABC-F family ATP-binding cassette domain-containing protein -
  SMI_RS05945 (smi_1173) - 1168015..1169733 (+) 1719 WP_000121684.1 phospho-sugar mutase -
  SMI_RS05950 (smi_1174) - 1169845..1170192 (+) 348 WP_000434642.1 thiol reductase thioredoxin -
  SMI_RS05955 (smi_1175) vicX 1170226..1171035 (-) 810 WP_000004959.1 MBL fold metallo-hydrolase Regulator
  SMI_RS05960 (smi_1176) micB 1171037..1172386 (-) 1350 WP_000593410.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SMI_RS05965 (smi_1177) micA 1172379..1173086 (-) 708 WP_000722073.1 response regulator YycF Regulator
  SMI_RS05970 (smi_1178) mutY 1173212..1174393 (-) 1182 WP_000267474.1 A/G-specific adenine glycosylase -
  SMI_RS05975 (smi_1179) pta 1174703..1175677 (-) 975 WP_000451589.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29900.85 Da        Isoelectric Point: 6.1738

>NTDB_id=36319 SMI_RS05955 WP_000004959.1 1170226..1171035(-) (vicX) [Streptococcus mitis B6]
MSETGFKYSILASGSSGNSFYLETPKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVILTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=36319 SMI_RS05955 WP_000004959.1 1170226..1171035(-) (vicX) [Streptococcus mitis B6]
ATGAGTGAAACAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCCTTTTATCTGGAAACCCCAAAAAA
GAAACTTTTAGTGGATGCAGGCTTGTCAGGCAAAAAAATCACCAGCCTACTTGCTGAAATTAATCGCAAGCCAGAAGATT
TGGATGCTATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAGGCTATGGAAAATAGCAAGTATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
CTTTGAAATGGGCAAAACTAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTTAGCCATGATGCAGTCGCACCTC
AGTTTTATCGCTTTATGAAGGATGATAAGAGTTTTGTCATACTGACTGATACAGGTTATGTTAGTGACCGTATGGCAGGG
ATTGTCGAAAATGCGGATGGTTATCTTATCGAGTCCAATCATGATGTAGAGATTTTGCGAGCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTCGGTCACCTTTCTAACGAGGACGGTGCTGAGGCCATGATTCGTACCTTAGGAA
ACCGCACTAAAAAAATCTATCTTGGGCATTTATCTAAGGAGAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTAGCACAAGCTGATCTGGGAGTTGGAGTAGACTTTAAGGTTTATGATACCTCACCGGATACCGCAACACCATTGAC
AGATATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A428HZR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.439

100

0.784

Multiple sequence alignment