Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SMI_RS04580 Genome accession   NC_013853
Coordinates   861375..863342 (+) Length   655 a.a.
NCBI ID   WP_000837407.1    Uniprot ID   D3H8G1
Organism   Streptococcus mitis B6     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 856375..868342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS04565 (smi_0904) - 856564..857385 (+) 822 Protein_865 aminoglycoside 6-adenylyltransferase -
  SMI_RS04570 (smi_0905) parC 857723..860194 (+) 2472 WP_012972502.1 DNA topoisomerase IV subunit A -
  SMI_RS04575 (smi_0906) - 860330..861352 (+) 1023 WP_000219008.1 branched-chain amino acid aminotransferase -
  SMI_RS04580 (smi_0907) amiA3 861375..863342 (+) 1968 WP_000837407.1 peptide ABC transporter substrate-binding protein Regulator
  SMI_RS04585 (smi_0908) - 863441..863671 (+) 231 WP_000037095.1 DUF2969 domain-containing protein -
  SMI_RS04600 (smi_0911) rpsA 864044..865246 (+) 1203 WP_001001631.1 30S ribosomal protein S1 -
  SMI_RS04605 (smi_0912) - 865332..865829 (+) 498 WP_000893978.1 GAF domain-containing protein -
  SMI_RS04610 (smi_0913) dnaX 865829..867484 (+) 1656 WP_000283801.1 DNA polymerase III subunit gamma/tau -
  SMI_RS04615 (smi_0914) - 867512..867706 (+) 195 WP_001081606.1 DUF3272 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72661.26 Da        Isoelectric Point: 5.1322

>NTDB_id=36314 SMI_RS04580 WP_000837407.1 861375..863342(+) (amiA3) [Streptococcus mitis B6]
MKSKKWLLTAGVVLSTTALLVACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGGTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLTIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=36314 SMI_RS04580 WP_000837407.1 861375..863342(+) (amiA3) [Streptococcus mitis B6]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTGGTCCTGAGTACAACAGCTCTTTTAGTGGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCATATGTCTATGCAGTAGATCCAGCATCTTTGGACTATAGTATAGCGACTC
GTACATCTACAACAGATGTCATCGGGAACGTGGTTGATGGTTTGATGGAAAATGACCAATACGGAAATGTTATTCCTTCC
TTGGCTGAAGATTGGTCTGTCTCAAAAGATGGTTTGACTTATACCTACAAACTACGTAAAGGAGTTAAATGGTACACTTC
TGAAGGTGAAGAATATGCAGAAGTAACAGCCCATGACTTTGTAACAGGATTGAAACACGTAGCTGACGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATCAAGGGCTTGGATGCCTACATGACTGGTGAGACCAATGATTTCTCTACAGTTGGT
GTTAAGGCCTTGGACGATTATACAGTTGAATATACCCTAAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACCACAGC
AACGATGTTGCCTGTAAATGAAGAGTTTTTGAAGGCGTCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGAATTCTCT
ACAATGGTCCTTATATCTTGAAGACCTTGACTTCTAAATCGTTAATTGAATACGAGAAAAACCCAAATTACTGGGATAAA
GAAAAGGTAAAAATCGAGAAGATTAAATTGACTTACTACGATGGTTCTGATCAGGAATCGTTGATTCGTAGTTTCTCTTC
TGGTGCCTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCTACTTTAGAGCAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATACAATAAAACTGCGAAAACA
AGTGAGGAGCAAAAGACTTCTACAAAAGAAGCGATGCTTAATAAGGACTTCCGTCAAGCTATCAATTTTGCCTTCAACCG
CCATTCTTATGCTGCTCAGTTAAATGGTGAAGATGGGGCGGACAAGATTATTCGTAACAGTTTAGTTCCAGATAACTTCG
TGCAAGCAGGTGGTAAGAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTACGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGCTGCTTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGGAACATTCCCAATTCACTTGGATGTCCCAGTTGAACAAACAGATACCATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCTATCGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGACGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATCACTTCTCAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAATAGTACAGGATGGGCTCCAAGTTATCAAGA
CCCAGCATCTTATTTAACTATCATGGATCCTAAATCAGGTTCTGCTATGAAACACCTAGGTATCACTAAAGGAAAAGACA
AGGATGTCGTAGCGAAACTTGGTTTGGATCAGTATAAGAAATTATTAGATGATGCGGATTCAGAAACTACGAATCTTGAA
GAGCGTTATGAAAAATATGCCAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCGACAGCCTCATCTGGTGG
TTCACCAGTTGTAAGTAATGTCGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAAGGTGACCCATATATCTTTA
AAGGAATGAAATTGCAAAAAGATATTGTTACAACAAAAGAATACGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAACGGTAAGTACCAAAAAGAACTAGAAAAACACATTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3H8G1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.727

100

0.531
  amiA Streptococcus salivarius strain HSISS4

52.28

100

0.525
  amiA3 Streptococcus thermophilus LMG 18311

52.121

100

0.525

Multiple sequence alignment