Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FEF05_RS06530 Genome accession   NZ_CP040243
Coordinates   1310813..1311310 (-) Length   165 a.a.
NCBI ID   WP_149350935.1    Uniprot ID   A0A859IGD1
Organism   Glaesserella parasuis strain HPS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1305813..1316310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS12155 (FEF05_06525) - 1306626..1309334 (-) 2709 WP_043896222.1 ATP-dependent DNA helicase -
  FEF05_RS06525 (FEF05_06530) - 1309396..1310607 (-) 1212 WP_149350934.1 ATP-binding protein -
  FEF05_RS06530 (FEF05_06535) ssb 1310813..1311310 (-) 498 WP_149350935.1 single-stranded DNA-binding protein Machinery gene
  FEF05_RS06535 (FEF05_06540) uvrA 1311613..1314441 (+) 2829 WP_149350936.1 excinuclease ABC subunit UvrA -
  FEF05_RS06540 (FEF05_06545) - 1314526..1314909 (+) 384 WP_026916461.1 YacL family protein -
  FEF05_RS06545 (FEF05_06550) - 1314875..1315126 (+) 252 WP_010786783.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18237.14 Da        Isoelectric Point: 5.2691

>NTDB_id=362840 FEF05_RS06530 WP_149350935.1 1310813..1311310(-) (ssb) [Glaesserella parasuis strain HPS-1]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGGGWNQAPVQTNFNGGNATRPQPAQKPAAQAEPTMDNFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=362840 FEF05_RS06530 WP_149350935.1 1310813..1311310(-) (ssb) [Glaesserella parasuis strain HPS-1]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAACGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGTGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTCCAAAT
GCTAGATAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTGGTGGCTGGAACCAAGCACCAGTGCAAACCAACT
TCAACGGAGGCAACGCAACCAGACCGCAACCAGCCCAAAAACCTGCGGCTCAAGCAGAACCAACAATGGATAATTTTGAT
GATGATATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A859IGD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

90

100

0.982
  ssb Vibrio cholerae strain A1552

53.591

100

0.588
  ssb Neisseria gonorrhoeae MS11

43.931

100

0.461
  ssb Neisseria meningitidis MC58

43.353

100

0.455

Multiple sequence alignment