Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FEF05_RS01215 | Genome accession | NZ_CP040243 |
| Coordinates | 229504..229956 (-) | Length | 150 a.a. |
| NCBI ID | WP_149350584.1 | Uniprot ID | K4JWF4 |
| Organism | Glaesserella parasuis strain HPS-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 224504..234956
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEF05_RS01195 (FEF05_01200) | - | 225126..225794 (-) | 669 | WP_035491631.1 | prepilin peptidase | - |
| FEF05_RS01200 (FEF05_01205) | pilC | 225791..226987 (-) | 1197 | WP_149350581.1 | type II secretion system F family protein | Machinery gene |
| FEF05_RS01205 (FEF05_01210) | pilB | 226980..228365 (-) | 1386 | WP_149350582.1 | GspE/PulE family protein | Machinery gene |
| FEF05_RS01210 (FEF05_01215) | - | 228698..229063 (-) | 366 | WP_149350583.1 | endonuclease domain-containing protein | - |
| FEF05_RS01215 (FEF05_01220) | pilA | 229504..229956 (-) | 453 | WP_149350584.1 | pilin | Machinery gene |
| FEF05_RS01220 (FEF05_01225) | radA | 230144..231520 (+) | 1377 | WP_149350585.1 | DNA repair protein RadA | - |
| FEF05_RS01225 (FEF05_01230) | gmk | 231573..232199 (-) | 627 | WP_149350586.1 | guanylate kinase | - |
| FEF05_RS01230 (FEF05_01235) | - | 232268..233240 (-) | 973 | Protein_246 | IS110 family transposase | - |
| FEF05_RS01235 (FEF05_01240) | gpt | 233641..234120 (-) | 480 | WP_005714020.1 | xanthine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 15981.61 Da Isoelectric Point: 9.3428
>NTDB_id=362829 FEF05_RS01215 WP_149350584.1 229504..229956(-) (pilA) [Glaesserella parasuis strain HPS-1]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGK
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGK
Nucleotide
Download Length: 453 bp
>NTDB_id=362829 FEF05_RS01215 WP_149350584.1 229504..229956(-) (pilA) [Glaesserella parasuis strain HPS-1]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCTG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCGAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACTCCGAAATTCGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGAAATAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCTG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCGAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACTCCGAAATTCGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
99.333 |
100 |
0.993 |
| pilA | Haemophilus influenzae Rd KW20 |
55.034 |
99.333 |
0.547 |
| pilA | Haemophilus influenzae 86-028NP |
54.362 |
99.333 |
0.54 |