Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   FD987_RS06915 Genome accession   NZ_CP040239
Coordinates   1355307..1355822 (-) Length   171 a.a.
NCBI ID   WP_002805379.1    Uniprot ID   -
Organism   Campylobacter coli strain S9     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1350307..1360822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS06900 (FD987_06900) - 1350412..1352226 (-) 1815 WP_052786021.1 motility associated factor glycosyltransferase family protein -
  FD987_RS06905 (FD987_06905) - 1352223..1354046 (-) 1824 WP_138013339.1 motility associated factor glycosyltransferase family protein -
  FD987_RS06910 (FD987_06910) - 1354057..1355307 (-) 1251 WP_002817246.1 DUF2920 family protein -
  FD987_RS06915 (FD987_06915) ctsG 1355307..1355822 (-) 516 WP_002805379.1 type II secretion system protein Machinery gene
  FD987_RS06920 (FD987_06920) tsaD 1355826..1356833 (-) 1008 WP_023362100.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  FD987_RS06925 (FD987_06925) - 1356830..1358224 (-) 1395 WP_002797421.1 M99 family carboxypeptidase catalytic domain-containing protein -
  FD987_RS06930 (FD987_06930) dxr 1358221..1359297 (-) 1077 WP_023362102.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FD987_RS06935 (FD987_06935) - 1359294..1360019 (-) 726 WP_023362104.1 phosphatidate cytidylyltransferase -
  FD987_RS06940 (FD987_06940) - 1360028..1360366 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18968.98 Da        Isoelectric Point: 8.4832

>NTDB_id=362812 FD987_RS06915 WP_002805379.1 1355307..1355822(-) (ctsG) [Campylobacter coli strain S9]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFKVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=362812 FD987_RS06915 WP_002805379.1 1355307..1355822(-) (ctsG) [Campylobacter coli strain S9]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAAGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778

Multiple sequence alignment