Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   FD987_RS06500 Genome accession   NZ_CP040239
Coordinates   1274991..1275641 (+) Length   216 a.a.
NCBI ID   WP_052777860.1    Uniprot ID   A0A5Y6QGN5
Organism   Campylobacter coli strain S9     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269991..1280641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS06480 (FD987_06480) - 1270847..1272301 (-) 1455 WP_023362047.1 MotA/TolQ/ExbB proton channel family protein -
  FD987_RS06485 (FD987_06485) fbaA 1272400..1273464 (-) 1065 WP_002777549.1 class II fructose-bisphosphate aldolase -
  FD987_RS06490 (FD987_06490) - 1273464..1274285 (-) 822 WP_002777551.1 peptidylprolyl isomerase -
  FD987_RS06495 (FD987_06495) nth 1274368..1274994 (+) 627 WP_002777553.1 endonuclease III -
  FD987_RS06500 (FD987_06500) CJE1441 1274991..1275641 (+) 651 WP_052777860.1 DNA/RNA non-specific endonuclease Regulator
  FD987_RS06505 (FD987_06505) - 1275651..1276286 (+) 636 WP_002823005.1 trimeric intracellular cation channel family protein -
  FD987_RS06510 (FD987_06510) - 1276361..1276579 (+) 219 WP_002780165.1 EexN family lipoprotein -
  FD987_RS06515 (FD987_06515) cmoA 1276583..1277287 (-) 705 WP_052777859.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  FD987_RS06520 (FD987_06520) - 1277291..1278127 (-) 837 WP_052777858.1 bifunctional riboflavin kinase/FAD synthetase -
  FD987_RS06525 (FD987_06525) - 1278096..1278845 (-) 750 WP_052777857.1 TlyA family RNA methyltransferase -
  FD987_RS06530 (FD987_06530) - 1278842..1279846 (-) 1005 WP_002786117.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25117.91 Da        Isoelectric Point: 9.9948

>NTDB_id=362811 FD987_RS06500 WP_052777860.1 1274991..1275641(+) (CJE1441) [Campylobacter coli strain S9]
MKLIIFLLAFTLHVFALEAYKPDKNFAPYFNPLNCSVVLDKFFYINCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFED
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERNLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFKECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=362811 FD987_RS06500 WP_052777860.1 1274991..1275641(+) (CJE1441) [Campylobacter coli strain S9]
ATGAAACTTATCATCTTTTTATTAGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAAATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATATCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGAT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTATAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAATCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTAAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(31-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y6QGN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

67.005

91.204

0.611
  CJE0566 Campylobacter jejuni RM1221

66.497

91.204

0.606

Multiple sequence alignment