Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   FD987_RS05860 Genome accession   NZ_CP040239
Coordinates   1148724..1149668 (+) Length   314 a.a.
NCBI ID   WP_002844797.1    Uniprot ID   -
Organism   Campylobacter coli strain S9     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1122485..1159802 1148724..1149668 within 0


Gene organization within MGE regions


Location: 1122485..1159802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS05745 (FD987_05745) - 1122485..1123414 (-) 930 WP_023361997.1 glycosyltransferase family 2 protein -
  FD987_RS05750 (FD987_05750) - 1123407..1124483 (-) 1077 WP_023361999.1 glycosyltransferase -
  FD987_RS05755 (FD987_05755) - 1124480..1126180 (-) 1701 WP_002844833.1 ABC transporter ATP-binding protein -
  FD987_RS05760 (FD987_05760) galE 1126174..1127160 (-) 987 WP_002844831.1 UDP-glucose 4-epimerase GalE -
  FD987_RS05765 (FD987_05765) - 1127217..1128008 (-) 792 WP_023362001.1 3'-5' exonuclease -
  FD987_RS05770 (FD987_05770) waaC 1128073..1129101 (+) 1029 WP_002786299.1 lipopolysaccharide heptosyltransferase I -
  FD987_RS05775 (FD987_05775) - 1129094..1129981 (+) 888 WP_002844825.1 lipid A biosynthesis lauroyl acyltransferase -
  FD987_RS05780 (FD987_05780) - 1129978..1131525 (+) 1548 WP_023362003.1 glycosyltransferase -
  FD987_RS05785 (FD987_05785) - 1131522..1132574 (+) 1053 WP_004291473.1 glycosyltransferase family 4 protein -
  FD987_RS05790 (FD987_05790) - 1132561..1133772 (-) 1212 WP_002844820.1 glycosyltransferase family 8 protein -
  FD987_RS05795 (FD987_05795) - 1133820..1134893 (-) 1074 WP_002844818.1 glycosyltransferase family 2 protein -
  FD987_RS05800 (FD987_05800) rfbH 1134909..1136231 (-) 1323 WP_002844816.1 lipopolysaccharide biosynthesis protein RfbH -
  FD987_RS05805 (FD987_05805) - 1136234..1137151 (-) 918 WP_002844814.1 NAD-dependent epimerase/dehydratase family protein -
  FD987_RS05810 (FD987_05810) - 1137155..1138912 (-) 1758 WP_002844812.1 thiamine pyrophosphate-binding protein -
  FD987_RS05815 (FD987_05815) rfbG 1138929..1140002 (-) 1074 WP_002844810.1 CDP-glucose 4,6-dehydratase -
  FD987_RS05820 (FD987_05820) rfbF 1140006..1140821 (-) 816 WP_002844809.1 glucose-1-phosphate cytidylyltransferase -
  FD987_RS05825 (FD987_05825) - 1140818..1141810 (-) 993 WP_223206634.1 alpha-1,2-fucosyltransferase -
  FD987_RS05830 (FD987_05830) - 1141803..1142822 (-) 1020 WP_002844805.1 glycosyltransferase family 10 domain-containing protein -
  FD987_RS05835 (FD987_05835) - 1143200..1144369 (-) 1170 WP_002844803.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  FD987_RS05840 (FD987_05840) - 1144362..1145300 (-) 939 WP_002844801.1 NAD-dependent epimerase/dehydratase family protein -
  FD987_RS05845 (FD987_05845) gmd 1145293..1146432 (-) 1140 WP_002844800.1 GDP-mannose 4,6-dehydratase -
  FD987_RS05850 (FD987_05850) - 1146433..1147800 (-) 1368 WP_002844799.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  FD987_RS05855 (FD987_05855) - 1147843..1148664 (-) 822 WP_002844798.1 glycosyltransferase family 2 protein -
  FD987_RS05860 (FD987_05860) waaF 1148724..1149668 (+) 945 WP_002844797.1 lipopolysaccharide heptosyltransferase II Regulator
  FD987_RS05865 (FD987_05865) - 1149661..1150425 (-) 765 WP_052777778.1 glycosyltransferase family 25 protein -
  FD987_RS05870 (FD987_05870) gmhA 1150425..1150985 (-) 561 WP_052777779.1 D-sedoheptulose 7-phosphate isomerase -
  FD987_RS05875 (FD987_05875) rfaE1 1150982..1152367 (-) 1386 WP_052777780.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  FD987_RS05880 (FD987_05880) rfaD 1152360..1153313 (-) 954 WP_002796912.1 ADP-glyceromanno-heptose 6-epimerase -
  FD987_RS05885 (FD987_05885) - 1153310..1153873 (-) 564 WP_052777781.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  FD987_RS05890 (FD987_05890) - 1153950..1154249 (+) 300 WP_002777238.1 cytochrome c -
  FD987_RS05895 (FD987_05895) - 1154279..1154479 (-) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  FD987_RS05900 (FD987_05900) - 1154472..1156835 (-) 2364 WP_072213620.1 heavy metal translocating P-type ATPase -
  FD987_RS05905 (FD987_05905) rho 1156948..1158246 (+) 1299 WP_002780613.1 transcription termination factor Rho -
  FD987_RS05910 (FD987_05910) - 1158249..1159802 (+) 1554 WP_052777783.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36096.73 Da        Isoelectric Point: 10.3770

>NTDB_id=362807 FD987_RS05860 WP_002844797.1 1148724..1149668(+) (waaF) [Campylobacter coli strain S9]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=362807 FD987_RS05860 WP_002844797.1 1148724..1149668(+) (waaF) [Campylobacter coli strain S9]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(108-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.748

99.682

0.825

Multiple sequence alignment