Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FD735_RS08265 Genome accession   NZ_CP040231
Coordinates   1579150..1581117 (-) Length   655 a.a.
NCBI ID   WP_139658948.1    Uniprot ID   A0A5B7Y8H1
Organism   Streptococcus sp. 1643     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574150..1586117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS08250 (FD735_08250) cps4B 1574645..1575376 (-) 732 WP_139658945.1 capsular polysaccharide biosynthesis protein Cps4B -
  FD735_RS08255 (FD735_08255) - 1575378..1576823 (-) 1446 WP_139658946.1 LCP family protein -
  FD735_RS08260 (FD735_08260) amiA3 1577040..1579001 (-) 1962 WP_139658947.1 peptide ABC transporter substrate-binding protein Regulator
  FD735_RS08265 (FD735_08265) amiA 1579150..1581117 (-) 1968 WP_139658948.1 peptide ABC transporter substrate-binding protein Regulator
  FD735_RS08270 (FD735_08270) - 1581287..1582897 (-) 1611 WP_139658949.1 alpha-glucosidase -
  FD735_RS08275 (FD735_08275) - 1583050..1584534 (+) 1485 WP_139658950.1 DUF1846 domain-containing protein -
  FD735_RS08280 (FD735_08280) - 1584629..1585111 (+) 483 WP_000032556.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72425.89 Da        Isoelectric Point: 5.0129

>NTDB_id=362663 FD735_RS08265 WP_139658948.1 1579150..1581117(-) (amiA) [Streptococcus sp. 1643]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQGKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=362663 FD735_RS08265 WP_139658948.1 1579150..1581117(-) (amiA) [Streptococcus sp. 1643]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTCGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCTAAAGACTTTGTTACTGGGCTTAAACATGCCGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTCAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTTAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTTCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACCCCATCAGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACCTTCTACGATGGATCAGACCAAGAATCCTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TTTACAGTCCACAAGAAGCGACTAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTACAATAAAACAGCCAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTTAACAAGAACTTCCGTCAGGCGCTAAACTTTGCCCTTGACCG
TCACTCATACACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCTCATGACTACG
TTCAAGTTGGTGAAAAAACCTTTGGAGAGTTGGCACAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAGGG
CAAGGGAGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCAGTTCAACAAACCAACTCAC
TCAAGCAGTCAATCGAATCATCGCTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACAGATAATGAAAAAATT
AGCATTACGTCTCAAGCCAAGGTGCCATCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATCCTTGATGCCAAGAAGGGATCGGCCCTTAAACACTTGGGAATCACTCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTTTTGGATGATGCTGCAGCTGAAACTAGCGACCTTAAT
AAGCGTTATGAAAAATACGCTAAAGCTCAAGCTTGGGTGTCAGACAGCTCGCTCTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGAACTGTACCATTCACAAAAGCATACTCTCAAGTCGGAATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGACGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7Y8H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.556
  amiA3 Streptococcus thermophilus LMD-9

54.021

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.566

100

0.539

Multiple sequence alignment