Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   FD735_RS08175 Genome accession   NZ_CP040231
Coordinates   1559890..1561872 (-) Length   660 a.a.
NCBI ID   WP_139658932.1    Uniprot ID   A0A5B7Y823
Organism   Streptococcus sp. 1643     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554890..1566872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS08150 (FD735_08150) gpsB 1555175..1555504 (-) 330 WP_033630347.1 cell division regulator GpsB -
  FD735_RS08155 (FD735_08155) - 1555574..1556101 (-) 528 WP_139658930.1 DUF1273 domain-containing protein -
  FD735_RS08160 (FD735_08160) recU 1556168..1556764 (+) 597 WP_000248756.1 Holliday junction resolvase RecU -
  FD735_RS08165 (FD735_08165) pbp1a 1556761..1558944 (+) 2184 WP_139658931.1 penicillin-binding protein PBP1A -
  FD735_RS09965 - 1559356..1559511 (-) 156 Protein_1533 IS3 family transposase -
  FD735_RS08175 (FD735_08175) amiA3 1559890..1561872 (-) 1983 WP_139658932.1 peptide ABC transporter substrate-binding protein Regulator
  FD735_RS08180 (FD735_08180) rfbD 1562111..1562941 (+) 831 WP_139658933.1 dTDP-4-dehydrorhamnose reductase -
  FD735_RS08185 (FD735_08185) - 1562893..1563200 (-) 308 Protein_1536 sugar phosphate nucleotidyltransferase -
  FD735_RS08190 (FD735_08190) - 1563249..1564301 (-) 1053 WP_139658934.1 galactofuranosyltransferase -
  FD735_RS08195 (FD735_08195) glf 1564329..1565432 (-) 1104 WP_139658935.1 UDP-galactopyranose mutase -
  FD735_RS08200 (FD735_08200) - 1565444..1566856 (-) 1413 WP_139658936.1 flippase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73405.74 Da        Isoelectric Point: 4.5642

>NTDB_id=362661 FD735_RS08175 WP_139658932.1 1559890..1561872(-) (amiA3) [Streptococcus sp. 1643]
MKSSKLLALAGVTLLAAATLAACSGSSSNAKGEKTFSYIYETDPDNLNYLTTGKAATANITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHLDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYSETEKTFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKVSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSNV
NLDDAQDGLYNPDKAKAEFAKAKTALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVIDIQQLQKDDV
QNITYFAETAAGEDWDISDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLEVQDKAVTIEEYQKAQEKW
LKEKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=362661 FD735_RS08175 WP_139658932.1 1559890..1561872(-) (amiA3) [Streptococcus sp. 1643]
ATGAAAAGTTCAAAACTACTTGCCCTTGCGGGTGTGACGTTATTGGCAGCTGCGACTCTTGCGGCTTGCTCTGGATCAAG
TTCAAATGCTAAAGGTGAGAAAACATTCTCATACATTTACGAAACGGATCCTGATAACCTAAACTATTTGACAACTGGTA
AGGCAGCTACAGCAAATATTACTAGTAACGTTATCGATGGCTTACTTGAAAATGACCGCTATGGTAACTTTGTACCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGATGGATTGACTTACACGTATACACTCCGAAAGGATGCAAAATGGTATACATC
TGAAGGTGAGGAGTATGCAGAAGTTAAAGCTCAAGACTTTGTAACTGGTCTTAAGTATGCTGCTGATAAGAAATCAGATG
GTCTTTACCTGGTTCAGGAATCTATCAAGGGATTGGATGCTTACGTCAAAGGAGAAATTACAGATTTTTCTCAAGTAGGA
ATCAAAGCTCTTGATGATTATACCGTTCAATACACATTGAACAAGCCAGAAAGTTTCTGGAATTCTAAGACAACAATGGG
TGTTCTGGCTCCTGTTAATGAAGAATTTTTGAACTCTAAAGGGGATGACTTTGCTAAAGGTACGGACCCAAGCAGCATTC
TCTATAATGGACCATTCTTACTCAAATCAATCGTAGCCAAATCATCAGTCGAGTTCGAAAAGAATCCAAACTATTGGGAC
AAAGACAATGTCCATCTTGATAAAGTGAAATTATCCTTCTGGGATGGTCAAGATACTAATAAGCCAACTGAAGCTTTCAA
AGACGGTAGCTTTACAATGGCTCGCCTCTTCCCAACAAGTGCTAGTTACTCAGAGACTGAAAAAACATTCAAAGACAATA
TCGTTTATACCCAACAAGATTCTACTACTTATTTAGTAGGCACAAATATCGATCGCCAGTCTTATAAGTACACTTCTAAG
ACAACAGATGAGGAAAAAGTATCAACCAAGAAGGCACTTTTGAATAAGGACTTCCGTCAAGCTATTGCATTTGGTTTTGA
CAGAACAGCCTACGCTTCTCAAGTAAATGGTGCAAGCGGGGCTACTAAACTGCTTCGTAACTTATTTGTTCCTCCTACAT
TTGTACAGGCAGATGGGAAAAACTTTGGGGAATTAGTTAAGGAAAAATTGGTGACCTATGGAGATGAGTGGAGTAACGTA
AACTTGGATGATGCCCAAGATGGACTCTACAATCCTGACAAAGCCAAAGCAGAATTCGCTAAAGCTAAGACAGCCCTTCA
AGCGGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGATCAAACAAATACAACAAAAGTTCAACGTGTTCAAT
CTTTTAAACAGTCAGTTGAAGAAAATCTAGGATCAGATAATGTGGTTATCGATATCCAACAGCTCCAAAAAGACGATGTT
CAAAACATTACCTACTTCGCTGAAACTGCGGCTGGAGAAGACTGGGATATCTCAGATAACGTGGGTTGGTCTCCAGACTA
TATCGATCCATCTACTTATCTTGATATTATCAAGCCTTCTGTAGGAGAAAACACGAAAACATATCTAGGATTTGATTCTG
GGACAAACAACGCTGCGGCTAAGCAAGTTGGTTTAGAAGACTACGAAAAAATGGTTGTGGAAGCTGGTGAAGAAACTACT
GATGTTTCAAAACGTTATGAGAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATTCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCATTTGCATACTCTGGTAACAAGGGTATGAGCG
AAGCCCTTTTGTACAAATATCTAGAAGTACAAGATAAGGCAGTGACAATAGAAGAATACCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCCCAAGAAGATCTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7Y823

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.363

100

0.605
  amiA Streptococcus salivarius strain HSISS4

59.909

100

0.6
  amiA3 Streptococcus thermophilus LMG 18311

59.758

100

0.598

Multiple sequence alignment