Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   FD735_RS08260 Genome accession   NZ_CP040231
Coordinates   1577040..1579001 (-) Length   653 a.a.
NCBI ID   WP_139658947.1    Uniprot ID   A0A5B7Y7Y9
Organism   Streptococcus sp. 1643     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572040..1584001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS08235 (FD735_08235) - 1572560..1573195 (-) 636 WP_139658942.1 sugar transferase -
  FD735_RS08240 (FD735_08240) - 1573251..1573934 (-) 684 WP_139658943.1 tyrosine-protein kinase -
  FD735_RS08245 (FD735_08245) cpsC 1573944..1574636 (-) 693 WP_139658944.1 capsular polysaccharide biosynthesis protein CpsC -
  FD735_RS08250 (FD735_08250) cps4B 1574645..1575376 (-) 732 WP_139658945.1 capsular polysaccharide biosynthesis protein Cps4B -
  FD735_RS08255 (FD735_08255) - 1575378..1576823 (-) 1446 WP_139658946.1 LCP family protein -
  FD735_RS08260 (FD735_08260) amiA3 1577040..1579001 (-) 1962 WP_139658947.1 peptide ABC transporter substrate-binding protein Regulator
  FD735_RS08265 (FD735_08265) amiA 1579150..1581117 (-) 1968 WP_139658948.1 peptide ABC transporter substrate-binding protein Regulator
  FD735_RS08270 (FD735_08270) - 1581287..1582897 (-) 1611 WP_139658949.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73023.28 Da        Isoelectric Point: 4.8329

>NTDB_id=362662 FD735_RS08260 WP_139658947.1 1577040..1579001(-) (amiA3) [Streptococcus sp. 1643]
MIKLKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSADGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKAYNHTAKTSD
QQKKSTQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEEESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=362662 FD735_RS08260 WP_139658947.1 1577040..1579001(-) (amiA3) [Streptococcus sp. 1643]
ATGATCAAACTGAAAAAAAGACTAATCGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTCTCTGCATGTGGACAGTC
CAACACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCAACAACTTTTAACTATCTCCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTTGTAGATGGTTTGTTAGAAAATGACAGCTATGGGAACCTCGTACCTGCTCTTGCG
GAGGATTGGTCTGTTTCAGCAGATGGTTTGACTTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACAGCTGACGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCCGCGGACAATAAGGGGCAAGCCATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACCAATGACTTTTCAACTGTCGGTGTCAAA
GCCTTGGATGATTACACAGTCGAGTACACTTTGACTCGACCAGAACCGTATTGGAATTCAAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATCCTTTATAACG
GTCCCTATCTGTTAAAAGATTTCACATCAAAATCTTCGATCGAATATGTGAAGAATCCACACTATTATGATCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCTTACTTTGATGGGTCAGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTCTATA
GCTTACAAGATAAGACATCTTGGTACTTTAACTTTAACGTTAACCGAAAAGCCTATAACCATACTGCAAAAACCTCAGAC
CAGCAAAAGAAATCAACTCAAACAGCTATCTTAAATAAAAATTTCCGTCAAGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTAGTTCCTCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GATGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACGAATAAAAATGCGGTTTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGACGTTCAACAGCTTTCTACAGATGACTTTGGAAATGTT
GCCTTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGACCCCTTCAATGCTGAAACTGGCTTCTATCTCAAGATTTTTGGTCTTGATGCCAAGGAAGACCAAGAGC
TCATTAAGAGTTTGGGGCTTGATACCTATACACAACTCCTGAAAGAAGCAGATGCTGAGAATAAAGATGTCGCTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTGGGAATCAAGGGTGACGGAAATAATTATAAGTACA
TGAGATTGCAAAAAGACCCTGTTACCAAGAAACAATTTGATGAAGCCAAGGCTAAGTGGGAAGAAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAGAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7Y7Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.846

99.541

0.516
  amiA3 Streptococcus thermophilus LMG 18311

51.692

99.541

0.515
  amiA Streptococcus salivarius strain HSISS4

50.61

100

0.508

Multiple sequence alignment