Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   FD735_RS02310 Genome accession   NZ_CP040231
Coordinates   398401..399060 (-) Length   219 a.a.
NCBI ID   WP_139658379.1    Uniprot ID   A0A5B7Y4P6
Organism   Streptococcus sp. 1643     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 393401..404060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS02280 (FD735_02280) - 393528..394094 (+) 567 WP_139658378.1 aminodeoxychorismate/anthranilate synthase component II -
  FD735_RS02285 (FD735_02285) trpD 394105..395109 (+) 1005 WP_042902637.1 anthranilate phosphoribosyltransferase -
  FD735_RS02290 (FD735_02290) trpC 395106..395873 (+) 768 WP_042902638.1 indole-3-glycerol phosphate synthase TrpC -
  FD735_RS02295 (FD735_02295) - 395860..396459 (+) 600 WP_042902639.1 phosphoribosylanthranilate isomerase -
  FD735_RS02300 (FD735_02300) trpB 396437..397660 (+) 1224 WP_042902640.1 tryptophan synthase subunit beta -
  FD735_RS02305 (FD735_02305) trpA 397653..398429 (+) 777 WP_042902641.1 tryptophan synthase subunit alpha -
  FD735_RS02310 (FD735_02310) cclA/cilC 398401..399060 (-) 660 WP_139658379.1 A24 family peptidase Machinery gene
  FD735_RS02315 (FD735_02315) - 399130..399585 (+) 456 WP_139658380.1 GNAT family N-acetyltransferase -
  FD735_RS02320 (FD735_02320) - 399689..400213 (+) 525 WP_139658381.1 thiol-disulfide isomerase -
  FD735_RS02325 (FD735_02325) - 400356..400805 (+) 450 WP_139658382.1 hypothetical protein -
  FD735_RS02330 (FD735_02330) - 401024..401227 (-) 204 WP_000102421.1 CsbD family protein -
  FD735_RS02335 (FD735_02335) - 401269..401853 (-) 585 WP_000072931.1 Asp23/Gls24 family envelope stress response protein -
  FD735_RS02340 (FD735_02340) - 401865..402035 (-) 171 WP_000454669.1 DUF2273 domain-containing protein -
  FD735_RS02345 (FD735_02345) amaP 402046..402609 (-) 564 WP_139658383.1 alkaline shock response membrane anchor protein AmaP -
  FD735_RS02350 (FD735_02350) - 402709..402945 (-) 237 WP_000964741.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 25026.23 Da        Isoelectric Point: 8.8126

>NTDB_id=362634 FD735_RS02310 WP_139658379.1 398401..399060(-) (cclA/cilC) [Streptococcus sp. 1643]
MIDLYFFLVGSILASFLGLVIDRFPEQSIIRPASHCDSCQTRLRPSDLIPILSQVFNRFRCRYCKIRYPFWYALFEFGLG
LIFLTWSWGFLSLGQVVLITAGLTLGIYDFRHQEYPLLVWLTFHLILMACSGWNLVMIFFLVLGIMAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFSSAAGILAFLSQKKKKRLPFVPFLLLATCVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=362634 FD735_RS02310 WP_139658379.1 398401..399060(-) (cclA/cilC) [Streptococcus sp. 1643]
ATGATTGATCTTTATTTTTTTCTTGTTGGGAGCATTCTCGCTTCCTTTCTAGGTTTGGTCATTGACCGTTTTCCTGAGCA
ATCCATTATTCGACCGGCTAGTCACTGTGATTCCTGTCAGACTCGCTTGCGTCCCTCAGATTTGATTCCTATTCTCTCGC
AGGTCTTCAATCGCTTTCGCTGTCGCTACTGCAAGATTCGCTATCCATTCTGGTATGCCCTTTTTGAATTCGGCTTAGGA
CTCATCTTTCTGACTTGGTCTTGGGGCTTTCTTTCCTTGGGGCAAGTCGTCCTTATCACTGCTGGTTTGACCTTGGGCAT
CTACGACTTTCGCCATCAGGAATATCCCTTACTAGTCTGGCTGACGTTCCACCTAATCCTCATGGCCTGCTCTGGCTGGA
ATCTGGTTATGATTTTCTTCCTTGTCCTCGGAATCATGGCCCATTTTATCGATATCCGCATGGGAGCAGGAGATTTTCTA
TTTCTGGCTTCTTGTGCGCTCGTTTTTAGTGTGACAGAATTACTCATCTTGATTCAGTTCTCTTCGGCAGCAGGGATTTT
AGCCTTTCTTTCGCAAAAGAAAAAGAAAAGACTTCCTTTTGTACCTTTCCTCTTACTTGCTACTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5B7Y4P6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

89.498

100

0.895

  cclA/cilC Streptococcus pneumoniae TIGR4

87.671

100

0.877

  cclA/cilC Streptococcus pneumoniae Rx1

87.671

100

0.877

  cclA/cilC Streptococcus pneumoniae D39

87.671

100

0.877

  cclA/cilC Streptococcus pneumoniae R6

87.671

100

0.877

  cclA/cilC Streptococcus mitis NCTC 12261

86.301

100

0.863


Multiple sequence alignment