Detailed information NTG0362444

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: E3S87_RS01855
• Genome accession: NZ_CP047793
• Coordinates: 349688..350374 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692881.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain UP_764
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 344688..355374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3S87_RS01840 (E3S87_01840)	-	344809..347439 (+)	2631	WP_000425358.1	valine--tRNA ligase	-
E3S87_RS01845 (E3S87_01845)	-	347452..348723 (+)	1272	WP_001108339.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
E3S87_RS01850 (E3S87_01850)	-	348984..349691 (+)	708	WP_000261106.1	prepilin peptidase	-
E3S87_RS01855 (E3S87_01855)	ysxA/radC	349688..350374 (+)	687	WP_000692881.1	RadC family protein	Machinery gene
E3S87_RS01860 (E3S87_01860)	-	350442..350726 (+)	285	WP_000171861.1	hypothetical protein	-
E3S87_RS01865 (E3S87_01865)	-	350842..351039 (-)	198	WP_000025835.1	hypothetical protein	-
E3S87_RS01870 (E3S87_01870)	-	351199..351672 (+)	474	WP_001236733.1	DUF4930 family protein	-
E3S87_RS01875 (E3S87_01875)	-	351746..351865 (+)	120	WP_000840603.1	hypothetical protein	-
E3S87_RS01880 (E3S87_01880)	mreC	352065..352907 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
E3S87_RS01885 (E3S87_01885)	mreD	352907..353437 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
E3S87_RS01890 (E3S87_01890)	rplU	353730..354038 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
E3S87_RS01895 (E3S87_01895)	-	354044..354364 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
E3S87_RS01900 (E3S87_01900)	rpmA	354376..354660 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25345.25 Da
• Isoelectric Point: 6.7572

>NTDB_id=362444 E3S87_RS01855 WP_000692881.1 349688..350374(+) (ysxA/radC) [Staphylococcus aureus strain UP_764]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREFFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=362444 E3S87_RS01855 WP_000692881.1 349688..350374(+) (ysxA/radC) [Staphylococcus aureus strain UP_764]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAATTTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373