Detailed information NTG0362399

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: FAY22_RS13630
• Genome accession: NZ_CP040128
• Coordinates: 2959491..2960948 (-)
• Length: 485 a.a.
• NCBI ID: WP_146330713.1
• Uniprot ID: A0A5B8N796
• Organism: Noviherbaspirillum sp. UKPF54
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2954491..2965948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FAY22_RS13620 (FAY22_13620)	-	2955601..2958489 (-)	2889	WP_371417399.1	ribonucleoside-diphosphate reductase subunit alpha	-
FAY22_RS13625 (FAY22_13625)	ampD	2958892..2959494 (-)	603	WP_146330712.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
FAY22_RS13630 (FAY22_13630)	pilR	2959491..2960948 (-)	1458	WP_146330713.1	sigma-54 dependent transcriptional regulator	Regulator
FAY22_RS13635 (FAY22_13635)	-	2960978..2962687 (-)	1710	WP_146330714.1	PAS domain-containing sensor histidine kinase	-
FAY22_RS13640 (FAY22_13640)	-	2962727..2962954 (-)	228	WP_146330715.1	PP0621 family protein	-
FAY22_RS13645 (FAY22_13645)	-	2962951..2963760 (-)	810	WP_146330716.1	inner membrane protein YpjD	-
FAY22_RS13650 (FAY22_13650)	ffh	2964051..2965418 (+)	1368	WP_146330717.1	signal recognition particle protein	-

Sequence

Protein

• Length: 485 a.a.
• Molecular weight: 52853.30 Da
• Isoelectric Point: 5.0877

>NTDB_id=362399 FAY22_RS13630 WP_146330713.1 2959491..2960948(-) (pilR) [Noviherbaspirillum sp. UKPF54]
MTAPRILVVDDEADLRELLEITLVRMGLDVDCADCLAAARAHLARHEYALVLTDMRLPDGLGIELVREVTAACKSTPIAV
ITAFGSADNAVAALKAGAFDYLSKPVGLDQLRLMVQSALRMHKTEDDSHDAGAQHAAHASRLIGQSAAMQDLRAQIARLA
RSMAPVAITGESGSGKELAARDIHAHSARADKPFIAVNCGAIPEALMEAEFFGYRRGAFTGANDDRDGFFQAANGGTLML
DEVADLPLPMQVKLLRAIQERRVRKVGATLEEPVDVRLVSATHQNLAECVEKGQFRQDLFYRLNVIELRLPPLRERLDDI
GLLADVILERLAPGGKAVLTPQALAALRSYSFPGNVRELENILERALAFANDGTIEVADLALKAVAPAPQIPLAQPVPQL
PQEEASVASPAEQADPPAPQTRTEDDDGELPHSLPDHLDNVEREIIRRALEKTHFNRTQAAELLGISFRQLRYRMQRLSI
HEPDS

Nucleotide

• Length: 1458 bp

>NTDB_id=362399 FAY22_RS13630 WP_146330713.1 2959491..2960948(-) (pilR) [Noviherbaspirillum sp. UKPF54]
ATGACTGCACCCCGTATTCTCGTCGTCGACGACGAAGCCGACCTGCGCGAGCTGCTCGAAATCACGCTTGTGCGGATGGG
GCTCGACGTCGACTGCGCGGATTGCCTGGCCGCGGCGCGTGCGCATCTGGCGCGCCACGAGTACGCGCTGGTACTGACCG
ACATGCGTCTGCCCGACGGGTTGGGCATCGAGCTGGTGCGGGAGGTGACCGCAGCCTGCAAGAGCACGCCGATTGCGGTG
ATCACCGCGTTCGGCAGCGCCGACAACGCGGTCGCGGCATTGAAGGCCGGCGCGTTCGACTACCTGTCCAAGCCGGTCGG
GCTCGATCAGTTGCGCCTGATGGTGCAGTCGGCGCTGCGCATGCACAAGACCGAAGACGACAGCCATGATGCCGGCGCGC
AGCATGCGGCGCACGCGTCGCGCCTGATCGGGCAGTCGGCAGCGATGCAGGACCTGCGCGCGCAGATCGCGCGCCTGGCG
CGCAGCATGGCACCGGTGGCGATTACCGGCGAGTCCGGCAGCGGCAAGGAACTCGCCGCGCGCGACATCCATGCGCACAG
CGCGCGCGCCGACAAGCCTTTCATTGCCGTCAATTGCGGCGCGATCCCGGAAGCATTGATGGAAGCCGAGTTTTTCGGCT
ACCGCAGGGGGGCGTTCACCGGAGCGAACGACGATCGCGACGGTTTTTTTCAGGCGGCCAACGGCGGCACCCTGATGCTC
GACGAGGTTGCCGACCTGCCGCTACCGATGCAGGTCAAGCTGTTGCGCGCCATCCAGGAGCGCCGCGTACGCAAGGTCGG
CGCAACGCTCGAGGAGCCGGTCGACGTGCGGCTCGTCAGTGCCACCCATCAGAACCTGGCCGAATGCGTCGAAAAGGGCC
AGTTCCGGCAGGACTTGTTTTACCGTCTGAACGTGATCGAACTGCGCCTGCCGCCGCTGCGCGAACGGCTCGACGACATC
GGCCTGCTGGCTGATGTCATTCTCGAACGGCTTGCGCCGGGCGGCAAGGCCGTCCTTACGCCGCAGGCATTGGCGGCGCT
GCGTTCCTATTCCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCACTCGCGTTCGCCAACGATGGGA
CGATCGAGGTTGCCGACCTTGCGTTGAAAGCCGTCGCTCCGGCGCCGCAGATTCCACTTGCACAGCCGGTACCACAGCTG
CCGCAAGAGGAGGCGTCGGTCGCATCTCCGGCAGAGCAAGCTGATCCCCCCGCGCCGCAAACGCGAACAGAGGATGACGA
CGGCGAACTGCCGCACTCGCTGCCGGACCACCTGGACAATGTCGAGCGTGAAATCATCCGGCGCGCGCTCGAAAAGACCC
ATTTCAACCGGACCCAGGCGGCCGAGCTCCTGGGCATCAGTTTCCGCCAGCTGCGTTACCGCATGCAGCGCCTGTCGATT
CACGAACCCGATTCATGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (438-478)

• Sigma-54 interaction domain (Sigma54_activat) (142-308)

• Response regulator receiver domain (Response_reg) (6-115)

3D structure

• AlphaFold DB: A0A5B8N796

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	52.381	99.588	0.522
pilR	Acinetobacter baumannii strain A118	44.398	99.381	0.441
luxO	Vibrio cholerae strain A1552	36.975	98.144	0.363