Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FDQ49_RS10590 Genome accession   NZ_CP040105
Coordinates   2260304..2260888 (+) Length   194 a.a.
NCBI ID   WP_002053972.1    Uniprot ID   A0A241YN96
Organism   Acinetobacter nosocomialis M2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2255304..2265888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS10565 (FDQ49_10565) - 2255924..2256277 (+) 354 WP_002053763.1 DUF1304 domain-containing protein -
  FDQ49_RS10570 (FDQ49_10570) - 2256330..2256671 (+) 342 WP_022576047.1 GlpM family protein -
  FDQ49_RS10575 (FDQ49_10575) tenA 2256722..2257396 (-) 675 WP_022576046.1 thiaminase II -
  FDQ49_RS10580 (FDQ49_10580) - 2257659..2258741 (+) 1083 WP_002054048.1 DUF475 domain-containing protein -
  FDQ49_RS10585 (FDQ49_10585) - 2258888..2260252 (+) 1365 WP_004711530.1 MFS transporter -
  FDQ49_RS10590 (FDQ49_10590) ssb 2260304..2260888 (+) 585 WP_002053972.1 single-stranded DNA-binding protein Machinery gene
  FDQ49_RS10595 (FDQ49_10595) - 2260929..2261252 (-) 324 WP_006580853.1 AzlD domain-containing protein -
  FDQ49_RS10600 (FDQ49_10600) - 2261249..2261944 (-) 696 WP_004884865.1 AzlC family ABC transporter permease -
  FDQ49_RS10605 (FDQ49_10605) - 2262013..2262561 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  FDQ49_RS10610 (FDQ49_10610) - 2262867..2264309 (+) 1443 WP_022576044.1 amino acid permease -
  FDQ49_RS10615 (FDQ49_10615) - 2264374..2265873 (-) 1500 WP_022576043.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21008.83 Da        Isoelectric Point: 6.4822

>NTDB_id=362233 FDQ49_RS10590 WP_002053972.1 2260304..2260888(+) (ssb) [Acinetobacter nosocomialis M2]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGGYGGQGG
FGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=362233 FDQ49_RS10590 WP_002053972.1 2260304..2260888(+) (ssb) [Acinetobacter nosocomialis M2]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTAACCCAGTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGTCAGGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAATGCACCTCAAC
AAGGTGGCGGTTATCAAAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGTGGT
TTCGGTAATGGTGGTAACAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAACCAGCATCTGCACCAGCTGA
TTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A241YN96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.746

100

0.526
  ssb Vibrio cholerae strain A1552

43.5

100

0.448
  ssb Neisseria meningitidis MC58

37.563

100

0.381
  ssb Neisseria gonorrhoeae MS11

37.563

100

0.381

Multiple sequence alignment