Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FDQ49_RS08655 Genome accession   NZ_CP040105
Coordinates   1845958..1847088 (+) Length   376 a.a.
NCBI ID   WP_031945669.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1840958..1852088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS08630 (FDQ49_08630) - 1841229..1841435 (-) 207 WP_004711026.1 DUF4199 domain-containing protein -
  FDQ49_RS08635 (FDQ49_08635) - 1841479..1843593 (-) 2115 WP_022574389.1 TonB-dependent copper receptor -
  FDQ49_RS08640 (FDQ49_08640) - 1843665..1844093 (-) 429 WP_022574388.1 DUF2946 family protein -
  FDQ49_RS08645 (FDQ49_08645) def 1844130..1844660 (-) 531 WP_002054252.1 peptide deformylase -
  FDQ49_RS08650 (FDQ49_08650) tsaP 1844783..1845937 (+) 1155 WP_022574387.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FDQ49_RS08655 (FDQ49_08655) dprA 1845958..1847088 (+) 1131 WP_031945669.1 DNA-processing protein DprA Machinery gene
  FDQ49_RS08660 (FDQ49_08660) - 1847139..1847708 (+) 570 WP_022574386.1 L-threonylcarbamoyladenylate synthase -
  FDQ49_RS08665 (FDQ49_08665) - 1848101..1849021 (-) 921 WP_080660804.1 DMT family transporter -
  FDQ49_RS08670 (FDQ49_08670) - 1849127..1849780 (-) 654 WP_006581284.1 TetR/AcrR family transcriptional regulator -
  FDQ49_RS08675 (FDQ49_08675) - 1849915..1851129 (+) 1215 WP_004883889.1 MFS transporter -
  FDQ49_RS08680 (FDQ49_08680) - 1851151..1851915 (+) 765 WP_004883891.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41848.28 Da        Isoelectric Point: 6.4984

>NTDB_id=362230 FDQ49_RS08655 WP_031945669.1 1845958..1847088(+) (dprA) [Acinetobacter nosocomialis M2]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGTCEKATQPDGLAKWSSLGLHANHLKRVNEFQTAQGQAQFEQLIQQV
QQHTDFILTPDDSGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQSQNEETNTYTSEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=362230 FDQ49_RS08655 WP_031945669.1 1845958..1847088(+) (dprA) [Acinetobacter nosocomialis M2]
ATGCTCACCCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAGCACTCATTAGTTAGTTTTAA
AAAAATTATCGATTATTTTGGAACTTGTGAAAAAGCAACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGTTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGGCACAAGGCCAAGCTCAGTTCGAACAGCTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACGCCCGATGACTCTGGCTACCCTACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAGGCATTATTGCAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGTCAGGTGGCTTATGATTTTGCCTACTACTTAAGTGAAAAGGGCTTTTTTATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCCGCTCATCAACGTACAATTGCAGTCACTGGTACGGGCCTAGACACTACCTA
TCCAGCTCAAAATAAAAAACTGGCAGAACATATTTTGGCTCAGAACGGCGCCATTATTACTGAGTTTTTACCTGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTTAGTGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCGCTCATCACGGCCAATAAAGCTGCTGAACAAGGCAAAACCGTATTCGCCATTCCGGGCCATATTTA
TAGTGAGTTCCATCAAGGATGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTTGATCATCCCGAACAAATTATTGAAG
ACCTCGCCTTACCAACTCAATGGCAAAGCCAGCAACAAAGTCAAAATGAAGAAACTAATACGTATACTTCAGAAATTCCT
GAGCATTTGATTGATCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTTTC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

95.745

100

0.957

  dprA Acinetobacter baumannii D1279779

95.745

100

0.957

  dprA Acinetobacter baylyi ADP1

71.129

100

0.721

  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383


Multiple sequence alignment