Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FCN45_RS01640 Genome accession   NZ_CP040095
Coordinates   366978..367532 (+) Length   184 a.a.
NCBI ID   WP_061718369.1    Uniprot ID   A0A7Y7SMF5
Organism   Pantoea sp. SO10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 361978..372532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN45_RS01625 (FCN45_01625) - 362286..362636 (+) 351 WP_101763060.1 MmcQ/YjbR family DNA-binding protein -
  FCN45_RS01630 (FCN45_01630) - 362643..363707 (-) 1065 WP_137384967.1 NAD(P)-dependent alcohol dehydrogenase -
  FCN45_RS01635 (FCN45_01635) uvrA 363927..366755 (-) 2829 WP_101763058.1 excinuclease ABC subunit UvrA -
  FCN45_RS01640 (FCN45_01640) ssb 366978..367532 (+) 555 WP_061718369.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FCN45_RS23855 (FCN45_01645) - 367918..368184 (-) 267 WP_137384968.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  FCN45_RS01650 (FCN45_01650) - 368255..368782 (-) 528 WP_137384969.1 isochorismatase family protein -
  FCN45_RS01655 (FCN45_01655) - 368904..369734 (+) 831 WP_137384970.1 AraC family transcriptional regulator -
  FCN45_RS01660 (FCN45_01660) - 369807..370760 (+) 954 WP_137384971.1 DMT family transporter -
  FCN45_RS01665 (FCN45_01665) - 371695..372090 (-) 396 WP_008109970.1 IS3 family transposase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19696.66 Da        Isoelectric Point: 5.2456

>NTDB_id=362041 FCN45_RS01640 WP_061718369.1 366978..367532(+) (ssb) [Pantoea sp. SO10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKTTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGQEKYTTEVVVNVGGTMQMLGGRQQGANAGGAPAGGQGGGNNNGWGQPQQPQQQPQGGGNQFSGGAQ
QRPQQQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=362041 FCN45_RS01640 WP_061718369.1 366978..367532(+) (ssb) [Pantoea sp. SO10]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTAGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCAAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAAAGCTGGCGCGATAAGACAACCGGTGAAAACAAAGAGATCACGG
AATGGCACCGCGTTGTGCTTTTCGGCAAGCTGGCGGAAGTGGCTGGCGAATACCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAAGCCGGCCAGGAAAAATACACCACTGAAGTGGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGACGTCAGCAGGGCGCGAACGCAGGTGGCGCACCGGCGGGCGGCCAGGGCGGCGGCA
ATAACAATGGTTGGGGCCAGCCACAGCAGCCACAACAGCAGCCGCAGGGCGGTGGCAACCAGTTCAGCGGCGGTGCGCAG
CAGCGTCCACAGCAGCAGAGCGCGCCTGCTAACAACGAACCGCCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7SMF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.899

100

0.728
  ssb Glaesserella parasuis strain SC1401

55.026

100

0.565
  ssb Neisseria meningitidis MC58

45.556

97.826

0.446
  ssb Neisseria gonorrhoeae MS11

45.556

97.826

0.446

Multiple sequence alignment