Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FDM99_RS03500 Genome accession   NZ_CP040080
Coordinates   710279..711409 (-) Length   376 a.a.
NCBI ID   WP_065087060.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SP304     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 705279..716409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDM99_RS03475 (FDM99_03475) - 705457..706221 (-) 765 WP_000786954.1 AraC family transcriptional regulator -
  FDM99_RS03480 (FDM99_03480) - 706243..707457 (-) 1215 WP_031998213.1 MFS transporter -
  FDM99_RS03485 (FDM99_03485) - 707594..708244 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  FDM99_RS03490 (FDM99_03490) - 708350..709270 (+) 921 WP_000084546.1 DMT family transporter -
  FDM99_RS03495 (FDM99_03495) - 709659..710228 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  FDM99_RS03500 (FDM99_03500) dprA 710279..711409 (-) 1131 WP_065087060.1 DNA-processing protein DprA Machinery gene
  FDM99_RS03505 (FDM99_03505) tsaP 711430..712584 (-) 1155 WP_086377671.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FDM99_RS03510 (FDM99_03510) def 712707..713237 (+) 531 WP_001196539.1 peptide deformylase -
  FDM99_RS03515 (FDM99_03515) - 713274..713702 (+) 429 WP_000231981.1 DUF2946 family protein -
  FDM99_RS03520 (FDM99_03520) - 713775..715889 (+) 2115 WP_137344801.1 TonB-dependent copper receptor -
  FDM99_RS03525 (FDM99_03525) - 715943..716149 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41900.40 Da        Isoelectric Point: 6.5418

>NTDB_id=361911 FDM99_RS03500 WP_065087060.1 710279..711409(-) (dprA) [Acinetobacter baumannii strain SP304]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTADDSGYPSQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=361911 FDM99_RS03500 WP_065087060.1 710279..711409(-) (dprA) [Acinetobacter baumannii strain SP304]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCATTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGGCAGATGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCACAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATTCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

97.872

100

0.979

  dprA Acinetobacter baumannii D1279779

97.606

100

0.976

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

42.598

88.032

0.375


Multiple sequence alignment