Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FDM99_RS01630 Genome accession   NZ_CP040080
Coordinates   315745..316326 (-) Length   193 a.a.
NCBI ID   WP_032025015.1    Uniprot ID   A0A0J8T650
Organism   Acinetobacter baumannii strain SP304     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 310745..321326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDM99_RS01605 (FDM99_01605) - 310764..312263 (+) 1500 WP_213076075.1 PLP-dependent aminotransferase family protein -
  FDM99_RS01610 (FDM99_01610) - 312324..313766 (-) 1443 WP_000718865.1 amino acid permease -
  FDM99_RS01615 (FDM99_01615) - 314072..314620 (-) 549 WP_000081859.1 helix-turn-helix domain-containing protein -
  FDM99_RS01620 (FDM99_01620) - 314689..315384 (+) 696 WP_137345234.1 AzlC family ABC transporter permease -
  FDM99_RS01625 (FDM99_01625) - 315381..315704 (+) 324 WP_000082712.1 AzlD domain-containing protein -
  FDM99_RS01630 (FDM99_01630) ssb 315745..316326 (-) 582 WP_032025015.1 single-stranded DNA-binding protein Machinery gene
  FDM99_RS01635 (FDM99_01635) - 316378..317742 (-) 1365 WP_000980460.1 MFS transporter -
  FDM99_RS01640 (FDM99_01640) - 317889..318971 (-) 1083 WP_000680214.1 DUF475 domain-containing protein -
  FDM99_RS01645 (FDM99_01645) tenA 319234..319908 (+) 675 WP_000899418.1 thiaminase II -
  FDM99_RS01650 (FDM99_01650) - 319958..320299 (-) 342 WP_000263329.1 GlpM family protein -
  FDM99_RS01655 (FDM99_01655) - 320352..320705 (-) 354 WP_000580164.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20992.83 Da        Isoelectric Point: 6.4822

>NTDB_id=361908 FDM99_RS01630 WP_032025015.1 315745..316326(-) (ssb) [Acinetobacter baumannii strain SP304]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGAQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=361908 FDM99_RS01630 WP_032025015.1 315745..316326(-) (ssb) [Acinetobacter baumannii strain SP304]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGCCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8T650

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

39.086

100

0.399
  ssb Neisseria gonorrhoeae MS11

39.086

100

0.399

Multiple sequence alignment