Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FCJ76_RS21080 Genome accession   NZ_CP039935
Coordinates   4046078..4046596 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain H19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4041078..4051596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS21050 yyaJ 4041582..4042937 (+) 1356 WP_014481501.1 MFS transporter -
  FCJ76_RS21055 maa 4042971..4043525 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  FCJ76_RS21060 yyaH 4043541..4043921 (-) 381 WP_029726089.1 VOC family protein -
  FCJ76_RS21065 ccpB 4043977..4044912 (-) 936 WP_086344554.1 transcriptional regulator CcpB -
  FCJ76_RS21070 xth 4044972..4045730 (-) 759 WP_086344555.1 exodeoxyribonuclease III -
  FCJ76_RS21075 rpsR 4045795..4046034 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  FCJ76_RS21080 ssbA 4046078..4046596 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  FCJ76_RS21085 rpsF 4046637..4046924 (-) 288 WP_024571351.1 30S ribosomal protein S6 -
  FCJ76_RS21090 ychF 4047035..4048135 (-) 1101 WP_134982536.1 redox-regulated ATPase YchF -
  FCJ76_RS21095 yyaE 4048262..4050265 (-) 2004 WP_137201151.1 molybdopterin-dependent oxidoreductase -
  FCJ76_RS21100 yyzM 4050316..4050522 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=361169 FCJ76_RS21080 WP_003219228.1 4046078..4046596(-) (ssbA) [Bacillus subtilis strain H19]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=361169 FCJ76_RS21080 WP_003219228.1 4046078..4046596(-) (ssbA) [Bacillus subtilis strain H19]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment