Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FAH66_RS02770 Genome accession   NZ_CP039887
Coordinates   550962..551495 (+) Length   177 a.a.
NCBI ID   WP_137040609.1    Uniprot ID   -
Organism   Neisseria subflava strain ATCC 49275     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 545962..556495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH66_RS02750 (FAH66_02750) rbfA 546612..546983 (-) 372 WP_003685554.1 30S ribosome-binding factor RbfA -
  FAH66_RS02755 (FAH66_02755) ppx 547071..548579 (-) 1509 WP_137040608.1 exopolyphosphatase -
  FAH66_RS02760 (FAH66_02760) - 548753..549376 (+) 624 WP_039863563.1 lytic transglycosylase domain-containing protein -
  FAH66_RS02765 (FAH66_02765) - 549578..550960 (+) 1383 WP_003685608.1 MFS transporter -
  FAH66_RS02770 (FAH66_02770) ssb 550962..551495 (+) 534 WP_137040609.1 single-stranded DNA-binding protein Machinery gene
  FAH66_RS02775 (FAH66_02775) - 551569..552276 (-) 708 WP_137040610.1 SIMPL domain-containing protein -
  FAH66_RS02780 (FAH66_02780) - 552389..552880 (-) 492 WP_063068729.1 DUF1841 family protein -
  FAH66_RS02785 (FAH66_02785) ftsB 552982..553257 (-) 276 WP_003679613.1 cell division protein FtsB -
  FAH66_RS02790 (FAH66_02790) eno 553281..554567 (-) 1287 WP_049328681.1 phosphopyruvate hydratase -
  FAH66_RS02795 (FAH66_02795) argB 554829..555716 (-) 888 WP_137040611.1 acetylglutamate kinase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19764.80 Da        Isoelectric Point: 5.7974

>NTDB_id=360932 FAH66_RS02770 WP_137040609.1 550962..551495(+) (ssb) [Neisseria subflava strain ATCC 49275]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSIATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGSRNDNSGGAPYDDGYNQGQGGHSSQSSYQQAPQQQYQSAPAQEPPAAPARRPA
PAQPTAPVDDIDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=360932 FAH66_RS02770 WP_137040609.1 550962..551495(+) (ssb) [Neisseria subflava strain ATCC 49275]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGTCTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCATTGCCACCAGCGAAACGTGGAACGACCGCAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGTCAATACCTGCGTAAAGGCAGCCAAGTGTACCTGGAAGGCCGTATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAGCGCACCGCTTACGACATCATTGCCAATGAGATGAAAATGCTCGG
CAGCCGTAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGCCAAGGCGGTCATTCAAGCCAAAGCA
GCTACCAACAAGCACCACAACAGCAATACCAATCTGCTCCGGCTCAAGAGCCCCCAGCCGCCCCAGCCCGTCGTCCTGCC
CCGGCACAACCGACCGCTCCGGTTGATGATATCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

79.67

100

0.819
  ssb Neisseria meningitidis MC58

79.121

100

0.814
  ssb Vibrio cholerae strain A1552

48.913

100

0.508
  ssb Glaesserella parasuis strain SC1401

47.027

100

0.492

Multiple sequence alignment