Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FAH67_RS11295 Genome accession   NZ_CP039886
Coordinates   2210040..2212172 (+) Length   710 a.a.
NCBI ID   WP_003682217.1    Uniprot ID   C0EQU4
Organism   Neisseria flavescens strain ATCC 13120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2205040..2217172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS11275 (FAH67_11275) pilM 2207071..2208162 (+) 1092 WP_039864346.1 type IV pilus assembly protein PilM -
  FAH67_RS11280 (FAH67_11280) pilN 2208167..2208790 (+) 624 WP_003682224.1 PilN domain-containing protein Machinery gene
  FAH67_RS11285 (FAH67_11285) pilO 2208790..2209461 (+) 672 WP_003682219.1 type 4a pilus biogenesis protein PilO -
  FAH67_RS11290 (FAH67_11290) pilP 2209477..2210019 (+) 543 WP_003682218.1 pilus assembly protein PilP Machinery gene
  FAH67_RS11295 (FAH67_11295) pilQ 2210040..2212172 (+) 2133 WP_003682217.1 type IV pilus secretin PilQ Machinery gene
  FAH67_RS11300 (FAH67_11300) - 2212296..2212817 (+) 522 WP_003682215.1 shikimate kinase -
  FAH67_RS11305 (FAH67_11305) aroB 2212840..2213919 (+) 1080 WP_003682211.1 3-dehydroquinate synthase -
  FAH67_RS11310 (FAH67_11310) - 2214050..2215360 (-) 1311 WP_003682210.1 ATP-binding protein -
  FAH67_RS11315 (FAH67_11315) - 2215390..2216067 (-) 678 WP_003682209.1 response regulator -
  FAH67_RS11320 (FAH67_11320) - 2216214..2216780 (-) 567 WP_039864340.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78103.33 Da        Isoelectric Point: 9.4716

>NTDB_id=360921 FAH67_RS11295 WP_003682217.1 2210040..2212172(+) (pilQ) [Neisseria flavescens strain ATCC 13120]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTSAAVANERAATPSTARAAQTYQAVSAANI
DFRKGVRNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNYNANKSFKGRKISLDFQDIEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGSLYSQTFQLKYKNVEEFRKILRLDEYDS
NNSNTRNTLLSNRGSALIDPGTNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGFVGAKGS
RAWGSNWSNAQTNYSTKFSSDRGDVDYPTWSLEPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEAASSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPHIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=360921 FAH67_RS11295 WP_003682217.1 2210040..2212172(+) (pilQ) [Neisseria flavescens strain ATCC 13120]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGACGTCACCACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATTGCATTGGATTTTGCCAACACCAATATCCGTTTGCCTCAGCCTGTTTTG
GAATATGCCGACCCATTGCTGAATCAAATTACTGCGGCGCAAAACAATGACCGCGCACGCGTGGTTTTGGGTTTGAATAA
AATCAGCCAATACAATACTGAGATTCGCGGCAACGAAGTTTGGGTATTTGTAAACGAATCTACTGATCAAACCAGTGCGG
CTGTTGCAAATGAACGTGCGGCTACGCCGTCTACCGCGCGTGCTGCTCAGACTTATCAAGCCGTTTCAGCAGCCAATATC
GATTTCCGTAAAGGCGTACGCAATTCCGGCATTATTGAATTGTCCGCCCCTGGTTTCAGCGGACAGCCGGATATTAAACA
GCAGCGCGACCGCGTGGTTGTGACATTGAAAAACCATACTTTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TTAATACACCTGTACAAAACGTTACGCTCAAACGTATCGGCAATTCTACCCAGCTTATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAGGCTTCTTCCGGACGTTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCGGCGG
CTTGAACTACAATGCGAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATATAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGTGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACCCTGTCCCTGAAA
GATGTACCTTGGGATCAGGCTTTAGACTTGGTTATGCAGGCGCGTAATTTGGATATGCGCCGTCAAGGCAACATCATTAA
TATTGCGCCTCGCGATGAATTATTGGCAAAAGACAAAGCCTTCTTGCAGGCTGAAAAAGAGATTGCCGAATTGGGTTCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAACGTGGAAGAATTCCGCAAAATTCTGCGGTTGGACGAATACGACAGC
AATAATTCCAATACCCGCAACACTCTGTTGAGCAACCGAGGCAGCGCCTTAATCGATCCGGGCACCAATACATTGATTGT
GACCGACAACCGCGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGACGTTCCAACCCGTCAAGTGATGGTGG
AAGCGCGTATTGTCGAAGCAGAAGATACCTTCTTCCGTAATTTGGGCGTTAAATTCGGTTTCGTTGGTGCGAAAGGCTCT
AGGGCATGGGGCAGCAACTGGAGCAATGCGCAAACCAACTACAGTACCAAGTTCTCATCTGACCGTGGCGACGTAGACTA
CCCCACATGGAGTTTGGAACCGAATGTCAGTCTGCCGACTGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGCGCATTGGGCTTGGAAATCAGCGCGTCTGAAGAACAGGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCCAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAGGCTGCTTCCAGCGGTGCGACTTC
GATTACCTTTAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACTCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
ACCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGCGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCACATCATGGATAATGTGGGTAACAATCTGCGTTACTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-115)

Bacterial type II and III secretion system protein (Secretin)

(545-702)

Secretin and TonB N terminus short domain (STN)

(303-350)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0EQU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

60.948

100

0.67
  pilQ Neisseria meningitidis MC58

60.33

100

0.67
  pilQ Neisseria gonorrhoeae strain FA1090

63.908

100

0.663

Multiple sequence alignment