Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GVI48_RS28270 Genome accession   NZ_CP047697
Coordinates   6121550..6122047 (-) Length   165 a.a.
NCBI ID   WP_023091006.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6116550..6127047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS28250 pchD 6117335..6118978 (+) 1644 WP_017002551.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  GVI48_RS28255 pchC 6118975..6119730 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  GVI48_RS28260 pchB 6119730..6120035 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  GVI48_RS28265 pchA 6120032..6121462 (+) 1431 WP_003114686.1 isochorismate synthase PchA -
  GVI48_RS28270 ssb 6121550..6122047 (-) 498 WP_023091006.1 single-stranded DNA-binding protein Machinery gene
  GVI48_RS28275 - 6122064..6123452 (-) 1389 WP_003103910.1 MFS transporter -
  GVI48_RS28280 uvrA 6123666..6126503 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  GVI48_RS28285 bfr 6126574..6127038 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18587.49 Da        Isoelectric Point: 5.2781

>NTDB_id=360910 GVI48_RS28270 WP_023091006.1 6121550..6122047(-) (ssb) [Pseudomonas aeruginosa strain RD1-3]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSSDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=360910 GVI48_RS28270 WP_023091006.1 6121550..6122047(-) (ssb) [Pseudomonas aeruginosa strain RD1-3]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCAGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

51.934

100

0.57
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515