Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   FAH67_RS06650 Genome accession   NZ_CP039886
Coordinates   1296502..1296789 (-) Length   95 a.a.
NCBI ID   WP_039863774.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1291502..1301789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS06625 (FAH67_06625) thiL 1291957..1292913 (-) 957 WP_003682580.1 thiamine-phosphate kinase -
  FAH67_RS06630 (FAH67_06630) - 1293101..1293820 (-) 720 WP_003682583.1 SDR family oxidoreductase -
  FAH67_RS06635 (FAH67_06635) hpnE 1293916..1295223 (-) 1308 WP_003682584.1 hydroxysqualene dehydroxylase HpnE -
  FAH67_RS06640 (FAH67_06640) hpnD 1295220..1296068 (-) 849 WP_003682586.1 presqualene diphosphate synthase HpnD -
  FAH67_RS06650 (FAH67_06650) comE 1296502..1296789 (-) 288 WP_039863774.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9791.48 Da        Isoelectric Point: 10.4923

>NTDB_id=360903 FAH67_RS06650 WP_039863774.1 1296502..1296789(-) (comE) [Neisseria flavescens strain ATCC 13120]
MKKFLFGAFAAVCAAFSLAAVNINTASSVELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=360903 FAH67_RS06650 WP_039863774.1 1296502..1296789(-) (comE) [Neisseria flavescens strain ATCC 13120]
ATGAAGAAATTTTTATTTGGTGCGTTTGCCGCCGTTTGTGCGGCGTTCTCTTTGGCTGCCGTGAACATCAATACTGCGTC
TTCTGTCGAACTGGAGGCCTTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCTGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

69.412

89.474

0.621
  comE Neisseria gonorrhoeae MS11

69.412

89.474

0.621
  comE Neisseria gonorrhoeae MS11

69.412

89.474

0.621
  comE Neisseria gonorrhoeae MS11

69.412

89.474

0.621
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.659

86.316

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4

Multiple sequence alignment