Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FCN51_RS19625 Genome accession   NZ_CP039846
Coordinates   1319533..1320093 (-) Length   186 a.a.
NCBI ID   WP_003626515.1    Uniprot ID   A0A401X6N0
Organism   Acetobacter pasteurianus strain CICC 22518     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1314533..1325093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN51_RS19600 (FCN51_08385) - 1315715..1316095 (+) 381 WP_160256652.1 hypothetical protein -
  FCN51_RS19605 (FCN51_08390) - 1316221..1317312 (+) 1092 WP_201762550.1 glycosyltransferase family 4 protein -
  FCN51_RS19615 (FCN51_08400) dksA 1317568..1317981 (-) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  FCN51_RS19620 (FCN51_08405) - 1318197..1319471 (-) 1275 WP_160256654.1 O-antigen ligase -
  FCN51_RS19625 (FCN51_08410) ssb 1319533..1320093 (-) 561 WP_003626515.1 single-stranded DNA-binding protein Machinery gene
  FCN51_RS19630 (FCN51_08415) rsmD 1320173..1320757 (-) 585 WP_160256655.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FCN51_RS19635 (FCN51_08420) - 1320757..1321533 (-) 777 WP_160256656.1 pseudouridine synthase -
  FCN51_RS19640 (FCN51_08425) - 1321530..1322261 (-) 732 WP_160256657.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  FCN51_RS19645 (FCN51_14485) - 1322387..1322539 (-) 153 WP_003626506.1 hypothetical protein -
  FCN51_RS19650 (FCN51_08430) - 1322760..1323215 (+) 456 WP_160256658.1 nucleoside deaminase -
  FCN51_RS19655 (FCN51_08435) - 1323390..1324958 (+) 1569 WP_124296222.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19838.50 Da        Isoelectric Point: 5.3755

>NTDB_id=360757 FCN51_RS19625 WP_003626515.1 1319533..1320093(-) (ssb) [Acetobacter pasteurianus strain CICC 22518]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSSEGEGEGGGFGGGSGSSYGGYNSGGGGGYGAPSSAPRQQPA
QRSGGNNSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=360757 FCN51_RS19625 WP_003626515.1 1319533..1320093(-) (ssb) [Acetobacter pasteurianus strain CICC 22518]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCCACCAGCGACACATGGAATGACCGCGCATCTGGTGAACGACGTGAACGCACAGAAT
GGCATCGCGTGGTTATTTTCAACGAACGTCTGGCAGATGTGGCCGAACGCTTCTTGCGCAAAGGCCGCAAGGTTTATCTG
GAAGGCTCCCTGCAGACCAGAAAATGGACAGATCAGGGTGGGCAGGAACGCTACACGACGGAAGTGATTATCGACCGTTT
CCGTGGTGAACTGGTGCTGCTGGATAGCCGCAATAGTAGCGAAGGCGAAGGTGAAGGCGGCGGCTTTGGTGGCGGAAGCG
GCAGCAGCTACGGCGGCTATAACAGTGGTGGCGGCGGTGGTTATGGCGCCCCATCATCCGCACCACGCCAGCAACCAGCA
CAGCGCAGCGGTGGCAATAACTCCGGCGGCTGGGATGCATCTGGCGGCAACGGAGATCTTGATGACGAAATTCCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A401X6N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.475

100

0.505
  ssb Vibrio cholerae strain A1552

44.565

98.925

0.441
  ssb Neisseria meningitidis MC58

38.798

98.387

0.382
  ssb Neisseria gonorrhoeae MS11

38.251

98.387

0.376

Multiple sequence alignment