Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FCT01_RS02800 Genome accession   NZ_CP039844
Coordinates   630131..630652 (+) Length   173 a.a.
NCBI ID   WP_094961402.1    Uniprot ID   -
Organism   Providencia rettgeri strain Pr-15-2-50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 625131..635652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCT01_RS02790 - 625546..626742 (+) 1197 WP_110592476.1 aromatic amino acid transaminase -
  FCT01_RS02795 uvrA 626823..629657 (-) 2835 WP_110592475.1 excinuclease ABC subunit UvrA -
  FCT01_RS02800 ssb 630131..630652 (+) 522 WP_094961402.1 single-stranded DNA-binding protein Machinery gene
  FCT01_RS02805 - 630937..631344 (-) 408 WP_110592474.1 helix-turn-helix domain-containing protein -
  FCT01_RS02810 - 631587..632759 (-) 1173 WP_110592473.1 MFS transporter -
  FCT01_RS02815 ivbL 633091..633180 (+) 90 WP_099975407.1 ilvB operon leader peptide IvbL -
  FCT01_RS02820 ilvB 633284..634981 (+) 1698 WP_110592472.1 acetolactate synthase large subunit -
  FCT01_RS02825 ilvN 634984..635268 (+) 285 WP_004260877.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18525.53 Da        Isoelectric Point: 4.9468

>NTDB_id=360741 FCT01_RS02800 WP_094961402.1 630131..630652(+) (ssb) [Providencia rettgeri strain Pr-15-2-50]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=360741 FCT01_RS02800 WP_094961402.1 630131..630652(+) (ssb) [Providencia rettgeri strain Pr-15-2-50]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCGGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATA
GAAGGTTCTTTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
CGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCGCAAGCAGCACAGCAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCGCCTGCTCCACAGACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

47.458

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.486

Multiple sequence alignment