Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GUU84_RS01110 Genome accession   NZ_CP047662
Coordinates   246034..246570 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain LD93-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 241034..251570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU84_RS01090 (GUU84_01090) aphA 241323..242036 (+) 714 WP_001226928.1 acid phosphatase AphA -
  GUU84_RS01095 (GUU84_01095) yjbQ 242147..242563 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GUU84_RS01100 (GUU84_01100) yjbR 242567..242923 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  GUU84_RS01105 (GUU84_01105) uvrA 242958..245780 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  GUU84_RS01110 (GUU84_01110) ssb 246034..246570 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GUU84_RS01115 (GUU84_01115) yjcB 246669..246950 (-) 282 WP_001295689.1 YjcB family protein -
  GUU84_RS01120 (GUU84_01120) pdeC 247380..248966 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  GUU84_RS01125 (GUU84_01125) soxS 248969..249292 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  GUU84_RS01130 (GUU84_01130) soxR 249378..249842 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=360661 GUU84_RS01110 WP_000168305.1 246034..246570(+) (ssb) [Escherichia coli strain LD93-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=360661 GUU84_RS01110 WP_000168305.1 246034..246570(+) (ssb) [Escherichia coli strain LD93-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489