Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E8Q40_RS12475 Genome accession   NZ_CP039740
Coordinates   2534241..2534756 (-) Length   171 a.a.
NCBI ID   WP_137044866.1    Uniprot ID   -
Organism   Pseudolabrys sp. FHR47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2529241..2539756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8Q40_RS12455 - 2529348..2530838 (-) 1491 WP_137044862.1 amino acid permease -
  E8Q40_RS12460 - 2531047..2532360 (+) 1314 WP_137044863.1 hemolysin family protein -
  E8Q40_RS12465 - 2532423..2532869 (+) 447 WP_137044864.1 DUF1772 domain-containing protein -
  E8Q40_RS12470 - 2532901..2534073 (-) 1173 WP_137044865.1 homoserine O-acetyltransferase -
  E8Q40_RS12475 ssb 2534241..2534756 (-) 516 WP_137044866.1 single-stranded DNA-binding protein Machinery gene
  E8Q40_RS12480 - 2535242..2535922 (+) 681 WP_168197825.1 outer membrane protein -
  E8Q40_RS12485 - 2536112..2536753 (+) 642 WP_137044868.1 outer membrane protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18211.13 Da        Isoelectric Point: 6.9882

>NTDB_id=360590 E8Q40_RS12475 WP_137044866.1 2534241..2534756(-) (ssb) [Pseudolabrys sp. FHR47]
MAGSVNKVILVGNLGADPEIRRTQDGRPVANLRIATSETWRDKNTGERKEKTEWHRVVVFNEGLCKVIEQYLKKGAKVYL
EGALQTRKWQDKDGQDRYSTEVVLQGFNSVLTMLDGRGGGGGSSGGGDVGSNDDFGSSGASGGFSGGGQRRQPAMAGGGG
RGNDMDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=360590 E8Q40_RS12475 WP_137044866.1 2534241..2534756(-) (ssb) [Pseudolabrys sp. FHR47]
ATGGCGGGTAGCGTCAACAAAGTGATTTTGGTCGGCAATCTGGGCGCCGACCCGGAAATTCGCCGCACGCAGGACGGCCG
TCCGGTCGCCAACCTGCGCATCGCGACATCGGAGACGTGGCGCGACAAGAACACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTCGTCGTGTTCAACGAAGGCTTGTGCAAGGTCATCGAGCAGTATCTCAAGAAGGGCGCCAAGGTTTACCTC
GAAGGCGCGCTGCAGACCCGCAAGTGGCAGGACAAGGACGGTCAGGATCGCTACTCGACCGAGGTCGTGCTGCAGGGCTT
CAACTCGGTGCTGACCATGCTCGACGGCCGCGGCGGTGGGGGCGGCAGCTCGGGCGGCGGCGACGTCGGCAGCAATGACG
ACTTCGGCTCCAGCGGTGCCAGCGGAGGCTTCAGCGGCGGCGGTCAGCGCCGGCAGCCGGCCATGGCCGGCGGTGGCGGC
CGCGGTAACGATATGGACGACGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.387

100

0.526
  ssb Vibrio cholerae strain A1552

51.445

100

0.52
  ssb Neisseria meningitidis MC58

39.779

100

0.421
  ssb Neisseria gonorrhoeae MS11

39.779

100

0.421

Multiple sequence alignment