Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   FAZ90_RS13310 Genome accession   NZ_CP039700
Coordinates   2948186..2948833 (+) Length   215 a.a.
NCBI ID   WP_016767798.1    Uniprot ID   A0AAN0LZQ5
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2932098..2947191 2948186..2948833 flank 995


Gene organization within MGE regions


Location: 2932098..2948833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS13225 (FAZ90_13225) - 2932098..2932523 (-) 426 WP_046209315.1 hypothetical protein -
  FAZ90_RS13230 (FAZ90_13230) - 2932495..2933262 (-) 768 WP_046209316.1 PilW family protein -
  FAZ90_RS13235 (FAZ90_13235) - 2933262..2933867 (-) 606 WP_046209317.1 type IV pilus modification PilV family protein -
  FAZ90_RS13240 (FAZ90_13240) - 2933857..2934357 (-) 501 WP_046209318.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FAZ90_RS13245 (FAZ90_13245) - 2934496..2934963 (-) 468 WP_016788316.1 type II secretion system protein -
  FAZ90_RS13250 (FAZ90_13250) - 2934998..2935573 (-) 576 WP_010434354.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FAZ90_RS13255 (FAZ90_13255) - 2935653..2936108 (-) 456 WP_046209319.1 hypothetical protein -
  FAZ90_RS13260 (FAZ90_13260) - 2936112..2937335 (-) 1224 WP_010434347.1 type II secretion system F family protein -
  FAZ90_RS13265 (FAZ90_13265) - 2937348..2939072 (-) 1725 WP_010434345.1 GspE/PulE family protein -
  FAZ90_RS13270 (FAZ90_13270) - 2939062..2940210 (-) 1149 WP_046209320.1 tetratricopeptide repeat protein -
  FAZ90_RS13275 (FAZ90_13275) - 2940213..2941052 (-) 840 WP_010434338.1 ExeA family protein -
  FAZ90_RS13280 (FAZ90_13280) mshL 2941106..2942743 (-) 1638 WP_046209321.1 pilus (MSHA type) biogenesis protein MshL -
  FAZ90_RS13285 (FAZ90_13285) - 2942759..2943091 (-) 333 WP_016788320.1 MSHA biogenesis protein MshK -
  FAZ90_RS13290 (FAZ90_13290) pilO 2943084..2943731 (-) 648 WP_010434330.1 type 4a pilus biogenesis protein PilO -
  FAZ90_RS13295 (FAZ90_13295) - 2943731..2945173 (-) 1443 WP_016788321.1 MSHA biogenesis protein MshI -
  FAZ90_RS13300 (FAZ90_13300) csrD 2945176..2947191 (-) 2016 WP_016767796.1 RNase E specificity factor CsrD -
  FAZ90_RS13305 (FAZ90_13305) ssb 2947353..2947907 (-) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene
  FAZ90_RS13310 (FAZ90_13310) qstR 2948186..2948833 (+) 648 WP_016767798.1 LuxR C-terminal-related transcriptional regulator Regulator

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25029.27 Da        Isoelectric Point: 9.9854

>NTDB_id=360193 FAZ90_RS13310 WP_016767798.1 2948186..2948833(+) (qstR) [Vibrio cyclitrophicus strain ECSMB14105]
MRKSRYARTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLIVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGIQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=360193 FAZ90_RS13310 WP_016767798.1 2948186..2948833(+) (qstR) [Vibrio cyclitrophicus strain ECSMB14105]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAGAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTACAAAGAGGTGCCACAGTTAATCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCCGAACAAAAAGTGAAAATAGCAAAGGGGATTCAACAGGTCATTAATGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCAGGGTCATCCAACACTCAAATAGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATTTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488

Multiple sequence alignment