Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FAZ90_RS13305 Genome accession   NZ_CP039700
Coordinates   2947353..2947907 (-) Length   184 a.a.
NCBI ID   WP_010434324.1    Uniprot ID   A0A7Z1MML7
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2932098..2947191 2947353..2947907 flank 162


Gene organization within MGE regions


Location: 2932098..2947907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS13225 (FAZ90_13225) - 2932098..2932523 (-) 426 WP_046209315.1 hypothetical protein -
  FAZ90_RS13230 (FAZ90_13230) - 2932495..2933262 (-) 768 WP_046209316.1 PilW family protein -
  FAZ90_RS13235 (FAZ90_13235) - 2933262..2933867 (-) 606 WP_046209317.1 type IV pilus modification PilV family protein -
  FAZ90_RS13240 (FAZ90_13240) - 2933857..2934357 (-) 501 WP_046209318.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FAZ90_RS13245 (FAZ90_13245) - 2934496..2934963 (-) 468 WP_016788316.1 type II secretion system protein -
  FAZ90_RS13250 (FAZ90_13250) - 2934998..2935573 (-) 576 WP_010434354.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FAZ90_RS13255 (FAZ90_13255) - 2935653..2936108 (-) 456 WP_046209319.1 hypothetical protein -
  FAZ90_RS13260 (FAZ90_13260) - 2936112..2937335 (-) 1224 WP_010434347.1 type II secretion system F family protein -
  FAZ90_RS13265 (FAZ90_13265) - 2937348..2939072 (-) 1725 WP_010434345.1 GspE/PulE family protein -
  FAZ90_RS13270 (FAZ90_13270) - 2939062..2940210 (-) 1149 WP_046209320.1 tetratricopeptide repeat protein -
  FAZ90_RS13275 (FAZ90_13275) - 2940213..2941052 (-) 840 WP_010434338.1 ExeA family protein -
  FAZ90_RS13280 (FAZ90_13280) mshL 2941106..2942743 (-) 1638 WP_046209321.1 pilus (MSHA type) biogenesis protein MshL -
  FAZ90_RS13285 (FAZ90_13285) - 2942759..2943091 (-) 333 WP_016788320.1 MSHA biogenesis protein MshK -
  FAZ90_RS13290 (FAZ90_13290) pilO 2943084..2943731 (-) 648 WP_010434330.1 type 4a pilus biogenesis protein PilO -
  FAZ90_RS13295 (FAZ90_13295) - 2943731..2945173 (-) 1443 WP_016788321.1 MSHA biogenesis protein MshI -
  FAZ90_RS13300 (FAZ90_13300) csrD 2945176..2947191 (-) 2016 WP_016767796.1 RNase E specificity factor CsrD -
  FAZ90_RS13305 (FAZ90_13305) ssb 2947353..2947907 (-) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20286.42 Da        Isoelectric Point: 5.2358

>NTDB_id=360192 FAZ90_RS13305 WP_010434324.1 2947353..2947907(-) (ssb) [Vibrio cyclitrophicus strain ECSMB14105]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=360192 FAZ90_RS13305 WP_010434324.1 2947353..2947907(-) (ssb) [Vibrio cyclitrophicus strain ECSMB14105]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCGAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z1MML7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.826
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.582
  ssb Neisseria meningitidis MC58

47.826

100

0.478
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.478

Multiple sequence alignment