Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FA702_RS07795 Genome accession   NZ_CP039695
Coordinates   1584477..1585028 (-) Length   183 a.a.
NCBI ID   WP_136955684.1    Uniprot ID   A0A4D7DB30
Organism   Novosphingobium sp. EMRT-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1579477..1590028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FA702_RS07785 (FA702_07785) - 1580623..1583454 (+) 2832 WP_136955682.1 valine--tRNA ligase -
  FA702_RS07790 (FA702_07790) - 1583563..1584306 (+) 744 WP_136955683.1 7-carboxy-7-deazaguanine synthase QueE -
  FA702_RS07795 (FA702_07795) ssb 1584477..1585028 (-) 552 WP_136955684.1 single-stranded DNA-binding protein Machinery gene
  FA702_RS07800 (FA702_07800) - 1585124..1586980 (-) 1857 WP_136955685.1 ferrous iron transporter B -
  FA702_RS07805 (FA702_07805) - 1586977..1587258 (-) 282 WP_370385502.1 FeoA family protein -
  FA702_RS07810 (FA702_07810) - 1587350..1588009 (-) 660 WP_136955686.1 COQ9 family protein -
  FA702_RS07815 (FA702_07815) - 1588023..1588613 (-) 591 WP_136955687.1 ankyrin repeat domain-containing protein -
  FA702_RS07820 (FA702_07820) - 1588744..1589337 (+) 594 WP_255504760.1 SCO family protein -
  FA702_RS07825 (FA702_07825) - 1589339..1589797 (+) 459 WP_136955689.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18484.00 Da        Isoelectric Point: 5.2705

>NTDB_id=360155 FA702_RS07795 WP_136955684.1 1584477..1585028(-) (ssb) [Novosphingobium sp. EMRT-2]
MAGSVNKVILVGNLGADPEVRSFQNGGKVCNLRIATSETWKDRNSGERQERTEWHSVAIFSEGLAGVAERFLRKGSKVYI
EGQLRTRKWQDQSGNDRYSTEVVLQGPGAVLTMLDGAPGAGGGGGGGFGGGQRSGGGGGGWNEGGSGGSSRGGGASSGGG
WNQGGGGSSGGGFSDDLDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=360155 FA702_RS07795 WP_136955684.1 1584477..1585028(-) (ssb) [Novosphingobium sp. EMRT-2]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGGGCGGACCCGGAAGTGCGTTCGTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACGTCGGAAACGTGGAAGGACCGCAATTCCGGCGAGCGGCAGGAACGTACCGAAT
GGCACAGCGTGGCGATCTTCTCCGAAGGTCTGGCGGGCGTGGCCGAACGGTTCCTGCGCAAGGGCAGCAAGGTCTATATC
GAAGGCCAGCTCCGCACCCGCAAGTGGCAGGACCAGTCGGGTAACGACCGCTACAGCACCGAAGTCGTGCTGCAAGGCCC
CGGTGCGGTGCTGACCATGCTGGATGGCGCGCCCGGTGCCGGTGGCGGCGGGGGTGGTGGCTTCGGGGGCGGTCAGCGTT
CGGGCGGCGGCGGAGGCGGATGGAACGAAGGCGGCAGCGGCGGCTCCTCACGCGGGGGCGGCGCGTCTTCGGGTGGGGGC
TGGAACCAGGGTGGCGGCGGATCGTCCGGTGGCGGCTTCTCCGACGATCTGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7DB30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.918

100

0.492
  ssb Vibrio cholerae strain A1552

48.901

99.454

0.486
  ssb Neisseria meningitidis MC58

37.363

99.454

0.372
  ssb Neisseria gonorrhoeae MS11

37.363

99.454

0.372

Multiple sequence alignment