Detailed information NTG0360090

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E2P79_RS16450
• Genome accession: NZ_CP039611
• Coordinates: 3482798..3483667 (+)
• Length: 289 a.a.
• NCBI ID: WP_136614168.1
• Uniprot ID: -
• Organism: Aeromonas schubertii strain LF1708
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3477798..3488667

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E2P79_RS16430 (E2P79_16430)	nadC	3478249..3479109 (+)	861	WP_136614165.1	carboxylating nicotinate-nucleotide diphosphorylase	-
E2P79_RS16435 (E2P79_16435)	-	3479370..3479807 (+)	438	WP_136614166.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E2P79_RS16440 (E2P79_16440)	pilB	3479807..3481513 (+)	1707	WP_136614167.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
E2P79_RS16445 (E2P79_16445)	pilC	3481534..3482772 (+)	1239	WP_050666599.1	type II secretion system F family protein	Machinery gene
E2P79_RS16450 (E2P79_16450)	pilD	3482798..3483667 (+)	870	WP_136614168.1	A24 family peptidase	Machinery gene
E2P79_RS16455 (E2P79_16455)	coaE	3483678..3484292 (+)	615	WP_136614169.1	dephospho-CoA kinase	-
E2P79_RS16460 (E2P79_16460)	zapD	3484331..3485053 (+)	723	WP_050666596.1	cell division protein ZapD	-
E2P79_RS16465 (E2P79_16465)	yacG	3485063..3485251 (+)	189	WP_050666595.1	DNA gyrase inhibitor YacG	-
E2P79_RS16470 (E2P79_16470)	mutT	3485283..3485693 (-)	411	WP_050666594.1	8-oxo-dGTP diphosphatase MutT	-
E2P79_RS16475 (E2P79_16475)	secA	3485756..3488467 (-)	2712	WP_136614170.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32101.40 Da
• Isoelectric Point: 7.1629

>NTDB_id=360090 E2P79_RS16450 WP_136614168.1 3482798..3483667(+) (pilD) [Aeromonas schubertii strain LF1708]
MTLLLQLSQAMPWLYYLLVALFALCVGSFLNVVIHRLPIMLERQWREEYRDYFTPDEATETAPFNLMVPRSRCPACGHGI
TAAENIPLLSWLWLRGRCSACKAPISARYPLVELVTALLSLVVAWQLPAGWPTLAGLLLTWSLIPLTLIDLDRMLLPDQI
TLPLLWGGVLVSLVDGFVPLSDAVIGAMVGYLTLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPLILLLSALV
GAMVGITLILLRRHQQGNPIPFGPYLAMAGWIALLWGDGITRWYLSTVL

Nucleotide

• Length: 870 bp

>NTDB_id=360090 E2P79_RS16450 WP_136614168.1 3482798..3483667(+) (pilD) [Aeromonas schubertii strain LF1708]
ATGACCCTGTTGCTTCAACTCAGCCAGGCCATGCCCTGGCTCTACTATCTTCTGGTGGCGCTCTTTGCCCTCTGTGTCGG
CAGCTTCCTCAATGTGGTGATCCATCGCCTTCCCATCATGCTGGAGCGCCAGTGGCGCGAGGAGTATCGGGACTACTTCA
CCCCGGATGAAGCAACGGAGACCGCCCCCTTCAATCTGATGGTCCCGCGCTCCCGCTGCCCTGCCTGCGGTCACGGCATC
ACGGCCGCCGAGAATATTCCCCTGCTGAGCTGGCTCTGGTTACGCGGCCGTTGCAGTGCCTGTAAGGCACCTATTTCGGC
TCGCTACCCGCTGGTTGAGTTGGTCACGGCTCTGCTCTCCCTGGTGGTGGCCTGGCAACTTCCCGCCGGTTGGCCCACCC
TGGCAGGGCTTCTGCTCACCTGGTCGCTTATCCCCCTGACCCTGATCGATCTGGATCGCATGCTACTGCCCGACCAGATC
ACCCTGCCCCTGCTCTGGGGAGGAGTGCTGGTCAGCCTTGTCGATGGCTTTGTCCCCCTCTCCGATGCGGTGATCGGCGC
CATGGTCGGATACCTGACCCTGTGGAGCCTCTATTGGGCCTTCAAGCTGCTGACCGGCAAAGAGGGGATGGGGTATGGGG
ACTTCAAACTGCTTGCCGCCCTTGGCGCCTGGCTCGGCTGGCAGGCACTGCCCCTGATCCTGCTGCTCTCGGCACTGGTC
GGAGCCATGGTTGGTATCACGCTGATTCTGCTTCGCCGCCACCAGCAGGGTAATCCCATCCCCTTTGGCCCCTACCTCGC
CATGGCCGGGTGGATAGCCCTGCTCTGGGGTGACGGGATCACCCGCTGGTACCTCTCCACCGTGCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.274	100	0.609
pilD	Vibrio campbellii strain DS40M4	54.296	100	0.547
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Acinetobacter baumannii D1279779	51.292	93.772	0.481
pilD	Neisseria gonorrhoeae MS11	50	92.042	0.46