Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   VB87_RS11960 Genome accession   NC_013722
Coordinates   2809445..2810503 (-) Length   352 a.a.
NCBI ID   WP_012916831.1    Uniprot ID   D2U991
Organism   Xanthomonas albilineans GPE PC73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2804445..2815503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB87_RS11940 (XALC_2349) - 2805567..2807462 (-) 1896 WP_045756968.1 type IV pilus secretin PilQ family protein -
  VB87_RS11945 (XALC_2350) - 2807483..2808022 (-) 540 WP_012916828.1 pilus assembly protein PilP -
  VB87_RS11950 (XALC_2351) - 2808019..2808690 (-) 672 WP_012916829.1 type 4a pilus biogenesis protein PilO -
  VB87_RS11955 (XALC_2352) - 2808687..2809445 (-) 759 WP_012916830.1 PilN domain-containing protein -
  VB87_RS11960 (XALC_2353) pilM 2809445..2810503 (-) 1059 WP_012916831.1 pilus assembly protein PilM Machinery gene
  VB87_RS11965 (XALC_2354) - 2810721..2813156 (+) 2436 WP_012916832.1 penicillin-binding protein 1A -
  VB87_RS11970 (XALC_2355) - 2813339..2813986 (+) 648 WP_012916833.1 hypothetical protein -
  VB87_RS11975 (XALC_2356) - 2814165..2815454 (-) 1290 WP_012916834.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37743.47 Da        Isoelectric Point: 4.5026

>NTDB_id=35984 VB87_RS11960 WP_012916831.1 2809445..2810503(-) (pilM) [Xanthomonas albilineans GPE PC73]
MGLIPKSQQPLIGIDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVIIKVIPMPAELDENELEAQVELEAVNYIPYPIEEVNLDFEVLGPVANNPEMVQVLLAASRSENVELRQSALELG
GLIAKVMDVEAFAVENAFALVASELPVASDGIVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRKGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAGLAGLPEMVEEQLGVATIVANPLA
QMTLGPKVQARALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=35984 VB87_RS11960 WP_012916831.1 2809445..2810503(-) (pilM) [Xanthomonas albilineans GPE PC73]
GTGGGGCTTATCCCGAAAAGTCAGCAGCCGCTGATCGGCATCGATATCAGTTCGACTGCGGTCAAACTGTTACAGCTGTC
GCGTAGCGGCAACCGGTTCCGTGTCGAGCATTACGCCGTCGAACCCTTGCCCCCAAACGCCGTGGTCGAAAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCGATTCGTCGCGCCGTGACCCGCTCCGGCACCCGTGCCAAGCATGCCGCTGCGGCT
GTTGCCGGTTCGGCGGTGATCATCAAGGTGATCCCGATGCCGGCCGAACTGGACGAGAACGAGCTGGAAGCGCAGGTCGA
GCTGGAGGCGGTGAACTACATCCCATACCCGATCGAGGAAGTAAACCTGGATTTCGAGGTCCTGGGTCCCGTCGCCAACA
ATCCGGAGATGGTGCAGGTGCTGCTGGCCGCGTCGCGCTCGGAGAATGTCGAGCTGCGCCAGTCGGCACTGGAGTTGGGC
GGTCTGATTGCCAAGGTGATGGATGTGGAGGCCTTCGCGGTCGAGAACGCTTTTGCGCTGGTGGCCAGCGAGCTGCCTGT
GGCCAGCGACGGTATCGTCGCCCTGGTCGATATCGGTGCGACCATGACCACCCTCAACGTGCTGCGCGGCGGGCGTAGCC
TCTACAGCCGTGAGCAGGTGTTCGGCGGCAAGCAACTGACCGACGAAGTGATGCGTCGCTATGGGTTGACCTACGAGGAA
GCCGGTATGGCCAAGCGCAAGGGCGGCCTGCCGGAGAGCTATGAAATCGAGGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTTTTCTATGCCGGTAGCGAGTTCAATCGGGTCGACCATATCGTATTGGCGGGCG
GTTGCGCAGGACTGGCCGGGTTGCCGGAGATGGTCGAGGAACAACTGGGCGTGGCGACCATCGTTGCCAACCCGTTGGCG
CAGATGACCCTGGGGCCAAAGGTCCAGGCGCGTGCGTTGGCTCAGGATGCGCCGGCCTTGATGATCGCCACCGGCCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2U991

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

49.714

99.432

0.494
  pilM Legionella pneumophila strain ERS1305867

47.309

100

0.474

Multiple sequence alignment