Detailed information NTG0035977

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: VB87_RS03790
• Genome accession: NC_013722
• Coordinates: 724344..725732 (-)
• Length: 462 a.a.
• NCBI ID: WP_012915196.1
• Uniprot ID: D2UBN5
• Organism: Xanthomonas albilineans GPE PC73
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 719344..730732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VB87_RS03770 (XALC_0664)	-	719379..720242 (-)	864	WP_012915192.1	A24 family peptidase	-
VB87_RS03775 (XALC_0665)	pilC	720249..721520 (-)	1272	WP_012915193.1	type II secretion system F family protein	Machinery gene
VB87_RS03780 (XALC_0666)	-	721886..722323 (+)	438	WP_012915194.1	pilin	-
VB87_RS03785 (XALC_0667)	pilB	722473..724200 (+)	1728	WP_012915195.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VB87_RS03790 (XALC_0668)	pilR	724344..725732 (-)	1389	WP_012915196.1	sigma-54 dependent transcriptional regulator	Regulator
VB87_RS03795 (XALC_0669)	-	725820..727433 (-)	1614	WP_012915197.1	ATP-binding protein	-
VB87_RS03800 (XALC_0670)	sucC	727724..728887 (+)	1164	WP_012915198.1	ADP-forming succinate--CoA ligase subunit beta	-
VB87_RS03805 (XALC_0671)	sucD	728914..729786 (+)	873	WP_012915199.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49909.41 Da
• Isoelectric Point: 6.5107

>NTDB_id=35977 VB87_RS03790 WP_012915196.1 724344..725732(-) (pilR) [Xanthomonas albilineans GPE PC73]
MNETRSALIVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNRYDLCITDMRLPDGNGIELVSEIAKHYPHTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQILRGLVKHALELNNATRAAAPIPAPEHASRLLGASAAMEALRNTIAKVAR
NQAPVYILGESGVGKELVARTIHEQSARAVGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERASDLP
HLAAAILLRLAKSHDRPAPLLSSSALDALSGYAFPGNVRELENILERALAMADDDQIDAADLRLPQPGNSARAAAEAAPA
LPPGVVDIDPGSSALPTYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=35977 VB87_RS03790 WP_012915196.1 724344..725732(-) (pilR) [Xanthomonas albilineans GPE PC73]
ATGAACGAAACCCGAAGCGCCCTGATCGTCGACGACGAGCGCGACATCCGCGAGTTACTGGTCCTGACCCTGGGCAGGAT
GGGCCTGCGCATCAGCACCGCCGCCAATTTGGCCGAAGCGCGCGAATTGCTGGCGAGCAATCGCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATTGCCAAGCACTATCCGCACACACCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAGGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
CGACATCCAGATTCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACGCAACGCGTGCCGCCGCGCCAATCCCGG
CGCCGGAACATGCCAGCCGCCTGCTCGGCGCATCGGCGGCGATGGAGGCGCTGCGCAACACCATCGCCAAGGTGGCACGC
AACCAAGCGCCGGTCTATATCCTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCCCGCACCATCCACGAACAGAGCGC
GCGCGCGGTCGGACCGTTCGTCCCGGTGAACTGCGGCGCGATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGGCATA
AGAAAGGCAGCTTCACCGGCGCGCATGCTGATCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGTACCTTGTTCCTCGAC
GAAGTCGCCGAACTGCCGTTGCCGATGCAGGTCAAGTTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CGCCACGGAAGTGCCGGTGGACGTGCGTATTCTCTCGGCAACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTATTACCGCATCAACGTGATCGAACTACGCGTGCCGCCGCTGCGCGAACGTGCCAGCGACCTGCCG
CACCTGGCCGCGGCGATTCTGTTGCGGCTGGCCAAGAGCCACGACCGGCCGGCCCCGTTGCTCTCGTCCTCCGCACTGGA
CGCGCTGAGCGGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCGATGGCCGACG
ACGACCAGATCGATGCCGCGGATCTACGCCTCCCGCAACCCGGCAACAGCGCCCGGGCGGCGGCCGAGGCCGCCCCGGCG
CTGCCGCCCGGCGTGGTCGACATCGATCCCGGTTCCTCGGCGCTGCCCACCTATATCGAGCAGCTCGAACGCGCGGCGAT
CCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTCGGCATCACCTTCCGCGCCCTGCGCT
ACAAACTGAAAAAGCTGGGTATGGAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

3D structure

• AlphaFold DB: D2UBN5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.745	99.351	0.623
pilR	Acinetobacter baumannii strain A118	47.21	100	0.476