Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ROD_RS17885 Genome accession   NC_013716
Coordinates   3823002..3823532 (-) Length   176 a.a.
NCBI ID   WP_012907662.1    Uniprot ID   D2TRS6
Organism   Citrobacter rodentium ICC168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3818002..3828532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROD_RS17870 (ROD_36261) - 3818274..3819591 (+) 1318 Protein_3564 IS4-like element ISCro6 family transposase -
  ROD_RS17875 (ROD_36271) - 3819712..3820143 (-) 432 WP_012907660.1 universal stress protein -
  ROD_RS17880 (ROD_36291) - 3820507..3822387 (-) 1881 WP_012907661.1 reverse transcriptase domain-containing protein -
  ROD_RS17885 (ROD_36301) ssb 3823002..3823532 (-) 531 WP_012907662.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ROD_RS17895 (ROD_36311) uvrA 3823786..3826608 (+) 2823 WP_012907663.1 excinuclease ABC subunit UvrA -
  ROD_RS17900 (ROD_36321) - 3826763..3827209 (+) 447 WP_231851581.1 hypothetical protein -
  ROD_RS17905 (ROD_36331) - 3827196..3827525 (+) 330 WP_012907665.1 hypothetical protein -
  ROD_RS17910 (ROD_36341) - 3827527..3827874 (-) 348 WP_012907666.1 MmcQ/YjbR family DNA-binding protein -
  ROD_RS17915 (ROD_36351) - 3827877..3828293 (-) 417 WP_012907667.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19108.14 Da        Isoelectric Point: 5.2358

>NTDB_id=35962 ROD_RS17885 WP_012907662.1 3823002..3823532(-) (ssb) [Citrobacter rodentium ICC168]
MASRGINKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRIVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGSRQGGGAPAGGQQQQGGWGQPQQPQQGGNQFSGGAQSRPQQSAPA
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=35962 ROD_RS17885 WP_012907662.1 3823002..3823532(-) (ssb) [Citrobacter rodentium ICC168]
ATGGCCAGCAGAGGCATAAACAAAGTTATTCTGGTTGGTAATCTGGGTCAGGACCCGGAAGTCCGCTATTTGCCGAGTGG
CGGCGCAGTTGCCAACTTTACGCTGGCTACGTCGGACTCCTGGCGCGACAAGCAGACCGGCGAAATGAAAGAACAGACCG
AATGGCACCGCATCGTGATGTTCGGCAAGCTGGCTGAAGTGGCAGGCGAATACCTGCGTAAAGGTTCCCAGGTTTACATC
GAAGGCCAGCTGCGCACCCGTAAATGGACCGATCAGAGCGGGCAGGAGCGCTACACCACCGAGATCAACGTGCCGCAGAT
TGGCGGCGTGATGCAGATGCTCGGCAGCCGTCAGGGCGGCGGCGCGCCAGCGGGCGGTCAGCAGCAGCAGGGCGGTTGGG
GCCAGCCGCAGCAACCGCAGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCGCCAGCA
GCGCCGTCTAACGAACCGCCGATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2TRS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.613

100

0.716
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.602
  ssb Neisseria meningitidis MC58

47.541

100

0.494
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.483

Multiple sequence alignment