Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E8E00_RS13595 Genome accession   NZ_CP039516
Coordinates   2906361..2907500 (-) Length   379 a.a.
NCBI ID   WP_240531915.1    Uniprot ID   -
Organism   Salinivibrio sp. YCSC6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2901361..2912500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E00_RS13560 (E8E00_13560) - 2901486..2901746 (-) 261 WP_096630355.1 DUF1488 family protein -
  E8E00_RS13565 (E8E00_13565) aroE 2901743..2902567 (-) 825 WP_096630352.1 shikimate dehydrogenase -
  E8E00_RS13570 (E8E00_13570) hemF 2902571..2903488 (-) 918 WP_096630350.1 oxygen-dependent coproporphyrinogen oxidase -
  E8E00_RS13575 (E8E00_13575) purE 2903667..2904149 (+) 483 WP_069362358.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  E8E00_RS13580 (E8E00_13580) - 2904154..2905302 (+) 1149 WP_096630348.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  E8E00_RS13585 (E8E00_13585) - 2905299..2905856 (-) 558 WP_077641435.1 type I DNA topoisomerase -
  E8E00_RS13590 (E8E00_13590) - 2905885..2906358 (-) 474 WP_096630346.1 DUF494 family protein -
  E8E00_RS13595 (E8E00_13595) dprA 2906361..2907500 (-) 1140 WP_240531915.1 DNA-processing protein DprA Machinery gene
  E8E00_RS13600 (E8E00_13600) - 2907460..2908521 (-) 1062 WP_096630343.1 LysM peptidoglycan-binding domain-containing protein -
  E8E00_RS13605 (E8E00_13605) def 2908639..2909151 (+) 513 WP_077458105.1 peptide deformylase -
  E8E00_RS13610 (E8E00_13610) fmt 2909159..2910103 (+) 945 WP_096630341.1 methionyl-tRNA formyltransferase -
  E8E00_RS13615 (E8E00_13615) rsmB 2910219..2911502 (+) 1284 WP_096630339.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 41399.66 Da        Isoelectric Point: 7.0470

>NTDB_id=359455 E8E00_RS13595 WP_240531915.1 2906361..2907500(-) (dprA) [Salinivibrio sp. YCSC6]
MRCHRPLNWPMRDKSLRGWLILTQVPRLRVSQRRALLAKVPIDALSEQTAHDLAAVGLTAEQCQAVTHPNHAMIERSLEW
ARQENCHLIGFDHPAYPALLREIARPPLLLYVQGDLTCLAMPQLAMVGSRHATPQGLETAYQFAKQLVEHGVAITSGLAL
GIDGRAHKGALEGHGKTLAVLGSGLANVYPARHRALAERIEAQGALVSEFWPEAPPRAEHFPRRNRLISGLSAGVLVVEA
APQSGSLITARYALEQNRDVFAIPGPIDQVQSRGCHQLIKQGATLTDCVDDILHEIDSLISFAACQQTELFSDAPKLDTH
EGLPFPELLANVGTKATCVDVLAERCNQPVHEIMMQLLDLELQGLVAAVPGGYVRTRRG

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=359455 E8E00_RS13595 WP_240531915.1 2906361..2907500(-) (dprA) [Salinivibrio sp. YCSC6]
ATGCGGTGCCACCGTCCCCTCAACTGGCCTATGCGCGATAAATCCCTGCGAGGGTGGTTGATACTGACCCAAGTGCCGCG
GTTGCGCGTTTCGCAGCGACGCGCGCTGTTGGCCAAAGTGCCCATCGATGCGTTGAGTGAGCAAACTGCTCATGATCTTG
CCGCGGTTGGTTTAACCGCTGAGCAGTGTCAGGCCGTCACGCATCCCAATCATGCCATGATTGAGCGTAGCCTTGAGTGG
GCGAGGCAAGAGAATTGCCACCTGATTGGCTTTGACCACCCAGCTTACCCTGCATTACTCCGAGAAATCGCACGGCCGCC
TTTGCTCTTGTATGTGCAAGGCGATCTGACTTGCTTGGCGATGCCTCAATTGGCGATGGTGGGCAGTCGTCACGCGACCC
CGCAAGGTTTAGAAACGGCGTATCAATTTGCTAAACAATTGGTTGAGCATGGTGTTGCGATTACCAGTGGGCTTGCGCTA
GGTATCGATGGCCGAGCACACAAAGGTGCTCTTGAAGGCCACGGCAAGACATTAGCAGTGCTAGGAAGCGGGCTTGCCAA
TGTGTATCCTGCACGACATCGTGCATTGGCTGAGCGGATTGAAGCACAAGGCGCACTGGTCTCAGAGTTCTGGCCAGAGG
CACCGCCAAGGGCTGAGCACTTTCCGCGGCGCAATCGACTGATCAGTGGGTTGTCGGCAGGCGTATTAGTGGTAGAGGCC
GCGCCACAAAGTGGGTCGCTGATCACGGCACGTTATGCACTTGAGCAAAATCGTGATGTGTTTGCGATTCCTGGGCCCAT
TGACCAAGTCCAGTCGCGTGGATGCCACCAATTGATTAAACAAGGGGCCACACTCACAGACTGTGTCGATGATATCTTGC
ATGAAATTGATAGCCTGATAAGCTTCGCCGCGTGTCAACAAACCGAATTATTTAGTGACGCGCCTAAGTTAGATACACAT
GAAGGATTGCCATTTCCTGAGCTGTTGGCTAACGTAGGTACTAAAGCGACGTGTGTCGACGTACTGGCTGAGCGCTGCAA
CCAACCGGTTCACGAAATCATGATGCAGTTGTTAGACTTAGAACTCCAGGGGCTTGTAGCAGCAGTACCCGGTGGCTATG
TCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(327-372)

DNA recombination-mediator protein A (DNA_processg_A)

(82-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.561

97.889

0.515
  dprA Vibrio cholerae strain A1552

50.535

98.681

0.499
  dprA Glaesserella parasuis strain SC1401

44.444

97.361

0.433
  dprA Legionella pneumophila strain ERS1305867

45.672

88.391

0.404
  dprA Haemophilus influenzae Rd KW20

44.543

89.446

0.398

Multiple sequence alignment