Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E8E00_RS11935 Genome accession   NZ_CP039516
Coordinates   2575739..2576281 (-) Length   180 a.a.
NCBI ID   WP_096630692.1    Uniprot ID   A0A2A4GJY8
Organism   Salinivibrio sp. YCSC6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2570739..2581281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E00_RS11915 (E8E00_11915) - 2570876..2571364 (-) 489 WP_136588387.1 hypothetical protein -
  E8E00_RS11920 (E8E00_11920) csrD 2571382..2573361 (-) 1980 WP_077662382.1 RNase E specificity factor CsrD -
  E8E00_RS11925 (E8E00_11925) - 2573483..2574370 (+) 888 WP_077479477.1 LysR family transcriptional regulator -
  E8E00_RS11930 (E8E00_11930) - 2574518..2575675 (+) 1158 WP_096630696.1 alpha-hydroxy acid oxidase -
  E8E00_RS11935 (E8E00_11935) ssb 2575739..2576281 (-) 543 WP_096630692.1 single-stranded DNA-binding protein Machinery gene
  E8E00_RS11940 (E8E00_11940) - 2576567..2577268 (+) 702 WP_069588187.1 LuxR C-terminal-related transcriptional regulator -
  E8E00_RS11945 (E8E00_11945) - 2577334..2578287 (+) 954 WP_096630689.1 acetyltransferase -
  E8E00_RS11950 (E8E00_11950) galU 2578550..2579410 (+) 861 WP_069588192.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20017.01 Da        Isoelectric Point: 4.9164

>NTDB_id=359447 E8E00_RS11935 WP_096630692.1 2575739..2576281(-) (ssb) [Salinivibrio sp. YCSC6]
MASRGINKVILIGNLGNDPEIRYLPNGGAVANLSLATSESWRDKSTGEMREKTEWHRVVLFGKTAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGSMQMLGGRAGPGQGQPMQPSQQQGGWGQPQQPQNNFNQQPPQQQAAPQSQP
QSQPQQQYNDLPDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=359447 E8E00_RS11935 WP_096630692.1 2575739..2576281(-) (ssb) [Salinivibrio sp. YCSC6]
ATGGCCAGCCGTGGCATAAACAAAGTCATCTTGATTGGTAATTTGGGCAATGATCCGGAAATCCGTTATCTCCCGAACGG
TGGTGCAGTGGCGAACTTAAGCCTAGCGACCTCGGAGTCATGGCGCGACAAGAGCACTGGCGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTCTGTTTGGTAAGACCGCAGAAGTGGCTGGCGAGTATTTGCGTAAGGGCTCGCAAGTTTATATT
GAAGGGCAGCTGCAAACGCGTAAATGGCAAGATCAAAGTGGTCAAGACCGCTACTCAACAGAAGTCGTGGTGCAAGGCTT
TAACGGTAGCATGCAAATGCTTGGTGGCCGTGCCGGACCAGGTCAAGGTCAGCCAATGCAGCCGTCGCAGCAACAAGGTG
GGTGGGGCCAGCCTCAACAGCCACAAAACAACTTCAACCAGCAGCCGCCTCAGCAGCAAGCCGCACCGCAATCTCAGCCA
CAATCGCAACCTCAGCAGCAGTACAACGATCTGCCTGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A4GJY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.054

100

0.761
  ssb Glaesserella parasuis strain SC1401

54.011

100

0.561
  ssb Neisseria meningitidis MC58

44.944

98.889

0.444
  ssb Neisseria gonorrhoeae MS11

43.956

100

0.444

Multiple sequence alignment