Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLKF_RS12235 | Genome accession | NC_013656 |
| Coordinates | 2497677..2498177 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis KF147 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2492677..2503177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLKF_RS12210 (LLKF_2430) | gnd | 2493918..2494823 (-) | 906 | WP_038603774.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLKF_RS12215 (LLKF_2431) | - | 2495016..2495864 (+) | 849 | WP_012898662.1 | MurR/RpiR family transcriptional regulator | - |
| LLKF_RS12220 (LLKF_2432) | - | 2495902..2496210 (+) | 309 | WP_010906371.1 | DUF960 domain-containing protein | - |
| LLKF_RS12225 (LLKF_2433) | - | 2496285..2497058 (-) | 774 | WP_012898663.1 | metallophosphoesterase | - |
| LLKF_RS12230 (LLKF_2434) | rpsR | 2497258..2497503 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLKF_RS12235 (LLKF_2435) | ssb | 2497677..2498177 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| LLKF_RS12240 (LLKF_2436) | rpsF | 2498207..2498500 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LLKF_RS12245 (LLKF_2437) | - | 2498692..2499546 (-) | 855 | WP_012898664.1 | undecaprenyl-diphosphate phosphatase | - |
| LLKF_RS12250 (LLKF_2438) | - | 2500069..2501535 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=35933 LLKF_RS12235 WP_003131953.1 2497677..2498177(-) (ssb) [Lactococcus lactis subsp. lactis KF147]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=35933 LLKF_RS12235 WP_003131953.1 2497677..2498177(-) (ssb) [Lactococcus lactis subsp. lactis KF147]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |