Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   E8M06_RS04510 Genome accession   NZ_CP039462
Coordinates   903823..905202 (+) Length   459 a.a.
NCBI ID   WP_136581250.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context


Location: 898823..910202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS04480 (E8M06_04485) pstA 899156..900043 (+) 888 WP_014635996.1 phosphate ABC transporter permease PstA -
  E8M06_RS04485 (E8M06_04490) pstB 900068..900871 (+) 804 WP_024413123.1 phosphate ABC transporter ATP-binding protein PstB -
  E8M06_RS04490 (E8M06_04495) pstB 900883..901641 (+) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  E8M06_RS04495 (E8M06_04500) phoU 901670..902326 (+) 657 WP_136581248.1 phosphate signaling complex protein PhoU -
  E8M06_RS04500 (E8M06_04505) - 902492..902965 (+) 474 WP_136581249.1 hypothetical protein -
  E8M06_RS04505 (E8M06_04510) ciaR 903159..903830 (+) 672 WP_014637852.1 response regulator transcription factor Regulator
  E8M06_RS04510 (E8M06_04515) ciaH 903823..905202 (+) 1380 WP_136581250.1 HAMP domain-containing sensor histidine kinase Regulator
  E8M06_RS04515 (E8M06_04520) - 905303..906532 (+) 1230 WP_044679497.1 transglutaminase domain-containing protein -
  E8M06_RS04520 (E8M06_04525) rpsT 906795..907043 (-) 249 WP_012027069.1 30S ribosomal protein S20 -
  E8M06_RS04525 (E8M06_04530) coaA 907102..908022 (-) 921 WP_002935283.1 type I pantothenate kinase -
  E8M06_RS04530 (E8M06_04535) - 908131..908721 (+) 591 WP_024376492.1 class I SAM-dependent methyltransferase -
  E8M06_RS04535 (E8M06_04540) - 908718..909995 (+) 1278 WP_024385288.1 pyrimidine-nucleoside phosphorylase -

Sequence


Protein


Download         Length: 459 a.a.        Molecular weight: 51828.35 Da        Isoelectric Point: 5.8702

>NTDB_id=358844 E8M06_RS04510 WP_136581250.1 903823..905202(+) (ciaH) [Streptococcus suis strain WUSS351]
MPKRIGKLVYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKEEPAMAVGFAIARTYEPNSVFILQD
SPTSEETTSSSSDSTPVPKDQKNTRDGDQLRLGVNTHVLLYSKSGEMVNPDTFTGLADLPLDKEKLGEIKEATVESSFGM
SEDYRYVTIELPTDELGYYSSYDIKYATILVNVSQIKSSIETYESTVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPEATILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGRIQITANIKDKSVYFTVADNGLGISDA
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKTLGGKISVRDNQPKGTIFEVGLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=358844 E8M06_RS04510 WP_136581250.1 903823..905202(+) (ciaH) [Streptococcus suis strain WUSS351]
ATGCCTAAGCGAATCGGAAAATTAGTGTATACGGATAAATTTTCCTTCTTTATCCGTTATTTTGCAGTATTTACCCTGAT
TTTTGGCTTGATGACAGCTATCATTTTTCAATTAATGCGTTCAACTATGTATCAAAATTCCGATAATACCTTGAAACGGA
TTAAGGAAGAACCAGCGATGGCTGTTGGTTTTGCAATCGCAAGAACCTATGAGCCCAACTCTGTCTTTATACTTCAAGAT
AGCCCAACTAGTGAAGAAACGACGAGCTCTAGCTCAGATAGCACGCCTGTTCCTAAAGATCAAAAAAATACTAGAGATGG
TGATCAGCTGAGATTAGGTGTCAATACTCATGTCTTACTCTATAGTAAAAGTGGAGAAATGGTCAATCCGGATACTTTTA
CTGGTTTGGCCGACCTACCGTTAGATAAGGAAAAATTGGGCGAAATTAAGGAAGCAACGGTTGAATCAAGCTTCGGTATG
TCTGAAGATTATCGCTATGTGACGATTGAGCTGCCTACAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTAGTGAATGTCAGCCAAATAAAATCCTCCATTGAGACCTATGAATCGACAGTTGCTATTGTTATGGTATCAG
CTTGGCTCATTTCTATCTTGGCTAGTATTTACCTATCAAATCTTAGCATGCGTCCAATTCTAATTAGCTATCAAAAGCAA
AAAGACTTTGTTGAAAATGCTAGTCATGAGTTGCGTACGCCGTTGGCTGTTCTCCAAAATCGCTTGGAGAGCCTATTTCG
CCATCCCGAAGCGACGATTTTAGAGAGTAGTGAAAGCATCGGATCTAGTTTAGAAGAAGTCCGAAATATGCGATTATTGA
CAACGAACCTGCTCAATTTGGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATCGATGTCCAACCCAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCCGAAGAAAATGGAAAAACACTAACAGTTAATAATTTGATTCATCAGCCGAT
TCGAACAGACAAGGTCCTTATTAAACAGTTGCTTACCATTTTATTTGACAATGCCATGAAGTATACCGATGATGATGGCA
GAATTCAAATTACAGCTAATATCAAGGATAAATCTGTCTACTTCACAGTTGCCGACAATGGTCTGGGAATCAGCGATGCC
GATAAGAAGAAAATCTTTGATCGCTTTTATCGAGTTGATAAGGCCAGAACGCGTCAAAAAGGTGGTTTCGGTCTAGGATT
ATCGCTGGCTCAGCAAATTATTAAGACATTAGGTGGGAAAATCTCTGTTAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTAGGATTACCTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

49.353

100

0.499

  ciaH Streptococcus pneumoniae D39

49.353

100

0.499

  ciaH Streptococcus pneumoniae R6

49.353

100

0.499

  ciaH Streptococcus pneumoniae TIGR4

49.353

100

0.499

  ciaH Streptococcus mutans UA159

50.336

97.386

0.49


Multiple sequence alignment