Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   E8M05_RS10205 Genome accession   NZ_CP039457
Coordinates   1952224..1952691 (+) Length   155 a.a.
NCBI ID   WP_231557406.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP067     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1947224..1957691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS10175 (E8M05_10165) - 1947960..1948256 (-) 297 WP_003066579.1 bacteriocin immunity protein -
  E8M05_RS10180 (E8M05_10170) - 1948256..1948474 (-) 219 WP_003066580.1 Blp family class II bacteriocin -
  E8M05_RS11900 - 1948666..1948785 (-) 120 WP_253066439.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  E8M05_RS11670 - 1948782..1949102 (-) 321 WP_230321658.1 CPBP family intramembrane glutamic endopeptidase -
  E8M05_RS11675 - 1949159..1949338 (-) 180 WP_003066584.1 hypothetical protein -
  E8M05_RS10190 (E8M05_10180) - 1949508..1949819 (-) 312 WP_003066586.1 hypothetical protein -
  E8M05_RS10195 (E8M05_10185) - 1949908..1950138 (-) 231 WP_061100340.1 bacteriocin -
  E8M05_RS10200 (E8M05_10190) - 1950383..1952161 (+) 1779 Protein_1914 peptide cleavage/export ABC transporter -
  E8M05_RS10205 (E8M05_10195) comB 1952224..1952691 (+) 468 WP_231557406.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  E8M05_RS10210 (E8M05_10200) rsmA 1952825..1953697 (-) 873 WP_061100342.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  E8M05_RS10215 (E8M05_10205) - 1953778..1954302 (-) 525 WP_061100343.1 DUF1697 domain-containing protein -
  E8M05_RS10220 (E8M05_10210) rnmV 1954299..1954868 (-) 570 WP_048791091.1 ribonuclease M5 -
  E8M05_RS10225 (E8M05_10215) - 1954861..1955631 (-) 771 WP_061100344.1 TatD family hydrolase -
  E8M05_RS10230 (E8M05_10220) - 1955864..1957429 (+) 1566 WP_233437507.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17128.55 Da        Isoelectric Point: 9.8537

>NTDB_id=358809 E8M05_RS10205 WP_231557406.1 1952224..1952691(+) (comB) [Streptococcus pasteurianus strain WUSP067]
MQAQLDQTNLSKADTVLKASQSGILHVSDEFEGQTLLPQGSQIAEIYPDIAKTQQVAIRYYVDSTHVSQLKKGQTVRLTL
EKISNHAIVITGKISKIASSATQTKEGNIFEVTALATVDKQDSSKLKYGLQGKTISTIGKKTFFNYYKDKLLKDF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=358809 E8M05_RS10205 WP_231557406.1 1952224..1952691(+) (comB) [Streptococcus pasteurianus strain WUSP067]
TTGCAAGCGCAGCTTGACCAGACAAATCTCTCCAAAGCTGACACCGTTTTAAAAGCTAGTCAAAGTGGCATTTTACATGT
TTCTGATGAATTTGAAGGGCAAACGCTCTTGCCGCAAGGCAGTCAGATTGCAGAGATTTACCCAGATATTGCCAAAACAC
AGCAAGTCGCTATCCGCTATTACGTTGACTCCACTCATGTTAGTCAATTGAAAAAAGGACAGACTGTTCGCCTAACCCTT
GAAAAAATTAGCAATCACGCCATTGTTATCACTGGCAAAATCAGTAAAATTGCAAGTTCTGCCACACAAACCAAAGAAGG
AAATATCTTTGAGGTGACAGCACTAGCCACCGTTGATAAACAAGATAGCTCCAAACTAAAATATGGTTTACAAGGCAAAA
CAATCAGCACTATCGGCAAAAAAACTTTCTTTAATTATTACAAAGACAAGCTATTAAAAGATTTTTGA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(16-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

58.209

86.452

0.503
  comB/nlmE Streptococcus mutans UA159

52.985

86.452

0.458
  comB Streptococcus gordonii str. Challis substr. CH1

39.073

97.419

0.381

Multiple sequence alignment