Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | E8M05_RS00860 | Genome accession | NZ_CP039457 |
| Coordinates | 122835..123806 (+) | Length | 323 a.a. |
| NCBI ID | WP_003062926.1 | Uniprot ID | A0AAW6YE98 |
| Organism | Streptococcus pasteurianus strain WUSP067 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 117835..128806
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E8M05_RS00820 (E8M05_00815) | - | 118759..119121 (+) | 363 | WP_003062916.1 | DUF1033 family protein | - |
| E8M05_RS00825 (E8M05_00820) | comYA | 119192..120133 (+) | 942 | WP_003062917.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| E8M05_RS00830 (E8M05_00825) | comYB | 120057..121100 (+) | 1044 | WP_003062919.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| E8M05_RS00835 (E8M05_00830) | comYC | 121100..121393 (+) | 294 | WP_003062921.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| E8M05_RS00840 (E8M05_00835) | comYD | 121377..121808 (+) | 432 | WP_003062922.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| E8M05_RS00845 (E8M05_00840) | comGE | 121762..122055 (+) | 294 | WP_080543606.1 | competence type IV pilus minor pilin ComGE | - |
| E8M05_RS00850 (E8M05_00845) | comYF | 122039..122476 (+) | 438 | WP_041974065.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| E8M05_RS00855 (E8M05_00850) | comYG | 122448..122780 (+) | 333 | WP_003062925.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| E8M05_RS00860 (E8M05_00855) | comYH | 122835..123806 (+) | 972 | WP_003062926.1 | class I SAM-dependent methyltransferase | Machinery gene |
| E8M05_RS00865 (E8M05_00860) | - | 123844..125043 (+) | 1200 | WP_003062927.1 | acetate kinase | - |
| E8M05_RS00870 (E8M05_00865) | - | 125204..125404 (+) | 201 | WP_136596396.1 | helix-turn-helix transcriptional regulator | - |
| E8M05_RS00875 (E8M05_00870) | - | 125414..125623 (+) | 210 | WP_003062929.1 | hypothetical protein | - |
| E8M05_RS00880 (E8M05_00875) | - | 125660..126088 (+) | 429 | WP_230321696.1 | ABC transporter permease | - |
| E8M05_RS00885 (E8M05_00880) | - | 126100..126738 (+) | 639 | WP_003062931.1 | CPBP family intramembrane glutamic endopeptidase | - |
| E8M05_RS00890 (E8M05_00885) | proC | 126782..127552 (-) | 771 | WP_003062932.1 | pyrroline-5-carboxylate reductase | - |
| E8M05_RS00895 (E8M05_00890) | pepA | 127613..128680 (-) | 1068 | WP_136596397.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 36594.62 Da Isoelectric Point: 4.4130
>NTDB_id=358769 E8M05_RS00860 WP_003062926.1 122835..123806(+) (comYH) [Streptococcus pasteurianus strain WUSP067]
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTFLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
ARFIQEDAVRPQILQESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAQTPETFVYPLSDLQSRETLTDFIGKFQKWKVDNMNFKK
NVI
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTFLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
ARFIQEDAVRPQILQESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAQTPETFVYPLSDLQSRETLTDFIGKFQKWKVDNMNFKK
NVI
Nucleotide
Download Length: 972 bp
>NTDB_id=358769 E8M05_RS00860 WP_003062926.1 122835..123806(+) (comYH) [Streptococcus pasteurianus strain WUSP067]
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAACTCTTTTTACTTGGGTGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAACTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGACCTTTTAGAAATTGGTAGTGGGACAGGGAACCTTGCTCAAACATTCTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTGTTGATTGATTTATCAGCAAGTATTGCAGAAGTGATGGATTCTGAT
GCTCGGTTTATTCAAGAAGACGCTGTGCGTCCACAAATTCTACAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTGGG
TTTCTATCCTAATGATGACATTGCAAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCACCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCCGTTAGTCTTTTGACAAGCAAACAG
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACTTTGCCAGAATCTATTTTTGGCAA
TGCAGCGAATGCGAAATCAATTTTTGTTTTGAAAAAACAAGCTGCGCAGACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAACTCTGACCGATTTCATTGGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTAAAAAA
AATGTGATATAA
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAACTCTTTTTACTTGGGTGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAACTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGACCTTTTAGAAATTGGTAGTGGGACAGGGAACCTTGCTCAAACATTCTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTGTTGATTGATTTATCAGCAAGTATTGCAGAAGTGATGGATTCTGAT
GCTCGGTTTATTCAAGAAGACGCTGTGCGTCCACAAATTCTACAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTGGG
TTTCTATCCTAATGATGACATTGCAAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCACCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCCGTTAGTCTTTTGACAAGCAAACAG
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACTTTGCCAGAATCTATTTTTGGCAA
TGCAGCGAATGCGAAATCAATTTTTGTTTTGAAAAAACAAGCTGCGCAGACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAACTCTGACCGATTTCATTGGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTAAAAAA
AATGTGATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
68.987 |
97.833 |
0.675 |
| comYH | Streptococcus mutans UA159 |
68.671 |
97.833 |
0.672 |