Detailed information NTG0358764

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: GTF73_RS13380
• Genome accession: NZ_CP047297
• Coordinates: 2936577..2938412 (-)
• Length: 611 a.a.
• NCBI ID: WP_001918120.1
• Uniprot ID: -
• Organism: Vibrio cholerae O1 biovar El Tor strain C6709
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2931577..2943412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF73_RS13360 (GTF73_13370)	fhuA	2931653..2933752 (-)	2100	WP_001244551.1	TonB-dependent siderophore receptor FhuA	-
GTF73_RS13365 (GTF73_13375)	-	2933887..2935716 (+)	1830	WP_000488008.1	ABC transporter ATP-binding protein	-
GTF73_RS13370 (GTF73_13380)	-	2935752..2936114 (-)	363	WP_001235441.1	hypothetical protein	-
GTF73_RS13375 (GTF73_13385)	-	2936285..2936584 (-)	300	WP_000807263.1	DUF3630 family protein	-
GTF73_RS13380 (GTF73_13390)	recQ	2936577..2938412 (-)	1836	WP_001918120.1	ATP-dependent DNA helicase RecQ	Machinery gene
GTF73_RS13385 (GTF73_13395)	rarD	2938639..2939481 (+)	843	WP_001889839.1	EamA family transporter RarD	-
GTF73_RS13390 (GTF73_13400)	ggt	2939655..2941409 (+)	1755	WP_001104638.1	gamma-glutamyltransferase	-
GTF73_RS13395 (GTF73_13405)	-	2941566..2942369 (+)	804	WP_000381934.1	AraC family transcriptional regulator	-
GTF73_RS13400 (GTF73_13410)	-	2942444..2943112 (+)	669	WP_001004599.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69128.42 Da
• Isoelectric Point: 7.1164

>NTDB_id=358764 GTF73_RS13380 WP_001918120.1 2936577..2938412(-) (recQ) [Vibrio cholerae O1 biovar El Tor strain C6709]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=358764 GTF73_RS13380 WP_001918120.1 2936577..2938412(-) (recQ) [Vibrio cholerae O1 biovar El Tor strain C6709]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAACT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCAGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCACAAGTGATTCGTTATCTGGAAACTCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCAGGGATGGATGCCGATGAGCGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGTCGCGCAGGGCGTGATGGTTTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGTATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTATTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGTTGCGCGGCATGCAAAACATCCGCATTCGCGAACATG
GTCACGACAAAATTACCACTTATGGGATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACATTGCAACTGACCGAAGAAGCTCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAACTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGACGAAGGGTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCAACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394